Query= MSMg01no533_h20.b1 MSMg01no533_h20.b1 CHROMAT_FILE:
MSMg01no533_h20.b1 PHD_FILE: MSMg01no533_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:42 2005
(663 letters)
>mm_chr10_21572370_21573433
Length = 1064
Score = 1133 bits (586), Expect = 0.0
Identities = 640/660 (96%), Gaps = 7/660 (1%)
Strand = Plus / Minus
Query: 1 atttttaggacacactgagtggacaagttggaaacatgtttaaattgcatgtactttttc 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 658 atttttaggacacactgagtggacaagttggaagcatgtttaaattgcatgtactttttc 599
Query: 61 tggctggctgtaaagccaatatttctccattgattcagatggctaccgagagctctagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tggctggctgtaaagccaatatttctccattgattcagatggctaccgagagctctagga 539
Query: 121 tttcca-ttttttattatttatttttctaggctgcgacatttcttattctatcttgtttg 179
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttccatttttttgttatttatttttctaggctgcgacatttcttattctatcttgtttg 479
Query: 180 aaaggaattttagactatgcagtgacttctgtgatcacagaatttaattaaccaggggat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaggaattttagactatgcagtgacttctgtgatcacagaatttaattaaccaggggat 419
Query: 240 tttaaaagaatggccctcaaaagaaggacccatgaggctgtggcggtggctcaggcctgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttaaaagaatggccctcaaaagaaggacccatgaggctgtggcggtggctcaggcctgg 359
Query: 300 catgcatgcatgaggacctgagtgtagaagcccacctccatgaaattgcttggcactgtg 359
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catgcatgcattagggcctgagtgtagaagcccacctccatgaaattgcttggcactgtg 299
Query: 360 tccgatgcctgtgaccctcgttggaggagggaagcaaggaagttctgatgtgagtgcagg 419
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tccaatgcctgtgaccctcattggaggagggaagcaaggaagttctgatgtgagtgcagg 239
Query: 420 gtctcataaaagagcaagtgtccaatgttagggtcatcgggatttaggtcagatggtaga 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtctcataaaagagcaagtgcccaatgttagggtcatcgggatttaggtcagatggtaga 179
Query: 480 ctgtttgcctagcatgcattaagtctccaatact-ctttta---tcaatgaaactaagaa 535
|||||||||||||||||| ||||||||||||||| | | | ||||||||||||||||
Sbjct: 178 ctgtttgcctagcatgcagtaagtctccaatactgcaataaaaatcaatgaaactaagaa 119
Query: 536 tcccattggggttgggggaggaaccttgatttttcaggtaacatgtgtcaacccagatgg 595
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 118 tcccattggggttggcagaggaaccttgatttttcaggtaac--gtgtcaacccagatgg 61
Query: 596 ggctctcccaaatttctggtaacacaagtgtcagtccatgagggattccagccaacagcc 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 ggctctcccaaatttctggtaacacaagtgtcagtccatgagggattccagccaacagcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_h20.g1 MSMg01no533_h20.g1 CHROMAT_FILE:
MSMg01no533_h20.g1 PHD_FILE: MSMg01no533_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:42 2005
(533 letters)
>mm_chr10_21390183_21391115
Length = 933
Score = 977 bits (505), Expect = 0.0
Identities = 526/533 (98%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 2 ggaacaagtttcacaaaaatgtttgcatattgctaaatgttttgctttaagaaatacttg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaacaagtttcacaaaaatgtttgcatattgctaaatgttttgctttaagaaatacttg 261
Query: 62 tcacaccaaaacccatgagctgcagtttgtgtgtctttcttttctttgccttttgtttga 121
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 262 tcacaccaaaacccatgagatgcagtttgtgtgtctttcttttctttgccttatgtttga 321
Query: 122 gtagaagatatcatctaaaataaaacttttaattaaaaatcttctgacatgagagagagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtagaagatatcatctaaaataaaacttttaattaaaaatcttctgacatgagagagagt 381
Query: 182 ccttcagccaaattagctcctgagtttgctgtgacatatgatgtcaagagtcttgccagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttcagccaaattagctcctgagtttgctgtgacatatgatgtcaagagtcttgccagt 441
Query: 242 acagataatctgggactaaagattgacctctgacttatacagtagagaatgatgattccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acagataatctgggactaaagattgacctctgacttatacagtagagaatgatgattccc 501
Query: 302 aataatccatatgttaaaacttcagttgtgggctaggttagagatttctttattatagag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aataatccatatgttaaaacttcagttgtgggctaggttagagatttctttattatagag 561
Query: 362 cagaatagtaacaagaataggaagcaaagcagggatactgttatccttttaatattggaa 421
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 cagaatagtaacaagaataggaagcaaagcaggaatactgttatccttttaatattggaa 621
Query: 422 ggatccactctcggcttgagtagtgaggaagtaattacag-taaattatcctcccatgta 480
||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 622 ggatccactcttggcttgagtagtgaggaagtaatta-aggtaaattatcctcccatgta 680
Query: 481 taacatgtagattacatggcccactatgttcatagcagctttatttataatag 533
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 taacatgtagattacatgccccactatgttcatagcagctttatttataatag 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
