BAC Information

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BAC

Clone NameMSMg01-534E11
Chromosome10 (Build37)
Map Location 75,047,664 - 75,217,663
singlet/doubletdoublet
Overlap geneGgt1, Ggtla1, Susd2, Cabin1
Upstream genePcdh15, EG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023
Downstream geneDdt, Gstt3, Gstt1, Gstt4, Gstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669, Suhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534E11.T7 (MSMg01no534_e11.b1)MSMg01-534E11.TJ (MSMg01no534_e11.g1)
ACCAG602001AG602002
length748754
length of high quality
(start - end)		700 (39 - 738)517 (68 - 584)
definitionCHROMAT_FILE: MSMg01no534_e11.b1 PHD_FILE: MSMg01no534_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:44 2005CHROMAT_FILE: MSMg01no534_e11.g1 PHD_FILE: MSMg01no534_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,216,968 - 75,217,663)(75,047,664 - 75,048,179)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TCCTACATTCGAATTGCAGCCTTAAATGCCAGCTCCACGATTGAGGATGA
CCATGAAGGAAGCTTCAAAAGTCACAAAATCCAGACAAAGGAGGCTCAGG
TATGCACTCTGAGGTCTGCTTCCGAGGAAGCTCCTGCTGCTCAGCTTAAA
TGAATCCCTTGTGTCCTCAGAGGAGTTGTAAGGGGGATGGCGCGCTGCAG
ACGGCCGCCTCTCCACCTCAGGTCGGACTTGTTTCCCTCGGGAGATGGTC
ATGCTGAAGAACTAACTGAATGCTCTTTGTGTTGTTGCCTTTTACCTACC
ACCTGCCCTCCCCCTTGTGCGTGCGTGCGTGCGTGTGCACACGGGACTCT
ACAGTAATGAGGTCTGAGCACTGAGTAGTAGATTTTCTTTGACTGCAGAG
GCTGTAGCTGACAGCTTAGCAGTCACTCAGAGCCTCCCTTTGCGTACATT
TGGATGTGAAAGGCTCTGTTCTGTGTGCTGGGAAGACGTCTCCACGTGAA
AGGCTCTGCTCTGGGTGGTGTGACGTCATCTCCTTCTTGGTTGCAGGAAG
CAGAAGCCTTTGCCCTATACCACAAGGCCCTGGATCTACAAAAACATGAC
AGGTTCGAGGAGTCCGCCAAGGCCTACCATGAGCTTCTGGAGGCTCGCCT
GCTGCGGGAGGTGAGGCACTGGGCTGGGGTTTGTTTTGTTTTTTTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACCTTCAGGATGATGGAGGCACCGCTCACCTG
TCTGCGGTTTCAGAGGATGGCAGTGCTGTGGCTGCCACCAGTACCATCAA
CCTCTAGTAGGGGCTGTGCAGCTGCTGGGCAGAGCAGGGACCTGGGGGTG
GGTGGGTGGGTGGGGCTCCTAGTAAGTGCTCTTGGCCTGGGCTGGGTGGG
GACCAGGTGGGGAATGGCTGGGTTGTATATCATTATCTGAGCTGGCCTAT
CTTCAGCTTTGGCTCCAAGGTCCTGTCTCGGGTCAGTGGCATCCTGTTTA
ATGATGAGATGGATGACTTCAGCTCGCCCAACTTCATCAATCAGTTCGGG
GTAGCCCCCTCACCAGCCAACTTCATCAAGCCAGGTGCAGGGTGGGAATC
CTGGGATGCAGGGCATGAGTTGGGAGGGGGCTGGTACCCTAGGCAGGCAG
CAGACCAGCACCCCTGTCTCCTCCTATGGATCATAGGTAAGCAGCCTCTT
TCATCCATGTGTCCCTCAATCATCCTGGATAAGGACGGCCAGGTTCGCAT
GGTGGTCGGAGCCTCAGGGGGTACCCAGATCACCACATCTGTTGCACTGG
TATGTGCCTTTTGCCTGCCCTTTCCTGCTTCCGTCTCTCTCTGCTCTTGC
TCCTGGGCTATACTGACATATTGAGATTCCTTTCCCGTCCGGCCTTCTTC
AATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_e11.b1 MSMg01no534_e11.b1 CHROMAT_FILE:
MSMg01no534_e11.b1 PHD_FILE: MSMg01no534_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:44 2005
         (700 letters)



>mm_chr10_75216764_75217863
          Length = 1100

 Score = 1323 bits (684), Expect = 0.0
 Identities = 693/696 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcctacattcgaattgcagccttaaatgccagctccacgattgaggatgacc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattccttcctagattcgaattgcagccttaaatgccagctccacgattgaggatgacc 841

                                                                       
Query: 65  atgaaggaagcttcaaaagtcacaaaatccagacaaaggaggctcaggtatgcactctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 atgaaggaagcttcaaaagtcacaaaatccagacaaaggaggctcaggtatgcactctga 781

                                                                       
Query: 125 ggtctgcttccgaggaagctcctgctgctcagcttaaatgaatcccttgtgtcctcagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggtctgcttccgaggaagctcctgctgctcagcttaaatgaatcccttgtgtcctcagag 721

                                                                       
Query: 185 gagttgtaagggggatggcgcgctgcagacggccgcctctccacctcaggtcggacttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gagttgtaagggggatggcgcgctgcagacggccgcctctccacctcaggtcggacttgt 661

                                                                       
Query: 245 ttccctcgggagatggtcatgctgaagaactaactgaatgctctttgtgttgttgccttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttccctcgggagatggtcatgctgaagaactaactgaatgctctttgtgttgttgccttt 601

                                                                       
Query: 305 tacctaccacctgccctcccccttgtgcgtgcgtgcgtgcgtgtgcacacgggactctac 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 600 tacctaccacctgccctcccccttgtgtgtgcgtgcgtgcgtgtgcacacgggactctac 541

                                                                       
Query: 365 agtaatgaggtctgagcactgagtagtagattttctttgactgcagaggctgtagctgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agtaatgaggtctgagcactgagtagtagattttctttgactgcagaggctgtagctgac 481

                                                                       
Query: 425 agcttagcagtcactcagagcctccctttgcgtacatttggatgtgaaaggctctgttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agcttagcagtcactcagagcctccctttgcgtacatttggatgtgaaaggctctgttct 421

                                                                       
Query: 485 gtgtgctgggaagacgtctccacgtgaaaggctctgctctgggtggtgtgacgtcatctc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtgtgctgggaagacgtctccacgtgaaaggctctgctctgggtggtgtgacgtcatctc 361

                                                                       
Query: 545 cttcttggttgcaggaagcagaagcctttgccctataccacaaggccctggatctacaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cttcttggttgcaggaagcagaagcctttgccctataccacaaggccctggatctacaaa 301

                                                                       
Query: 605 aacatgacaggttcgaggagtccgccaaggcctaccatgagcttctggaggctcgcctgc 664
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 aacatgacaggttcgaggagtccgccaaggcctaccacgagcttctggaggctcgcctgc 241

                                               
Query: 665 tgcgggaggtgaggcactgggctggggtttgttttg 700
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgcgggaggtgaggcactgggctggggtttgttttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space:   752100
Effective search space used:   752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_e11.g1 MSMg01no534_e11.g1 CHROMAT_FILE:
MSMg01no534_e11.g1 PHD_FILE: MSMg01no534_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:44 2005
         (517 letters)



>mm_chr10_75047464_75048379
          Length = 916

 Score =  969 bits (501), Expect = 0.0
 Identities = 513/517 (99%), Gaps = 1/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taccttcaggatgatggaggcaccgctcacctgtctgcggtttcagaggatggcagtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taccttcaggatgatggaggcaccgctcacctgtctgcggtttcagaggatggcagtgct 260

                                                                       
Query: 61  gtggctgccaccagtaccatcaacctctagtaggggctgtgcagctgctgggcagagcag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggctgccactagtaccatcaacctctagtaggggctgtgcagctgctgggcagagcag 320

                                                                       
Query: 121 ggacctgggggtgggtgggtgggtggggctcctagtaagtgctcttggcctgggctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacctgggggtgggtgggtgggtggggctcctagtaagtgctcttggcctgggctgggt 380

                                                                       
Query: 181 ggggaccaggtggggaatggctgggttgtatatcattatctgagctggcctatcttcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggaccaggtggggaatggctgggttgtatatcattatctgagctggcctatcttcagc 440

                                                                       
Query: 241 tttggctccaaggtcctgtctcgggtcagtggcatcctgtttaatgatgagatggatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggctccaaggtcctgtctcgggtcagtggcatcctgtttaatgatgagatggatgac 500

                                                                       
Query: 301 ttcagctcgcccaacttcatcaatcagttcggggtagccccctcaccagccaacttcatc 360
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 501 ttcagctcgcccaacttcatcaaccagttcagggtagccccctcaccagccaacttcatc 560

                                                                       
Query: 361 aagccaggtgcagggtgggaatcctgggatgcagggcatgagttgggagggggctggtac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccaggtgcagggtgggaatcctgggatgcagggcatgagttgggagggggctggtac 620

                                                                       
Query: 421 cctaggcaggcagcagaccagcacccctgtctcctcctatggatcataggtaagcagcct 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctaggcaggcagcagaccagc-cccctgtctcctcctatggatcataggtaagcagcct 679

                                                
Query: 481 ctttcatccatgtgtccctcaatcatcctggataagg 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctttcatccatgtgtccctcaatcatcctggataagg 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space:   459342
Effective search space used:   459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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