BAC Information

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BAC

Clone NameMSMg01-534G05
Chromosome10 (Build37)
Map Location 124,167,948 - 124,168,588
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790, 4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534G05.T7 (MSMg01no534_g05.b1)MSMg01-534G05.TJ (MSMg01no534_g05.g1)
ACCAG602085AG602086
length746732
length of high quality
(start - end)
554 (44 - 597)641 (72 - 712)
definitionCHROMAT_FILE: MSMg01no534_g05.b1 PHD_FILE: MSMg01no534_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:53 2005CHROMAT_FILE: MSMg01no534_g05.g1 PHD_FILE: MSMg01no534_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAATTTTCCTGACAGGATGTGACTGTACAAAGAAAGCCCCTCTCTG
CTTGTCATCTGTTAGGACTGATTTCTCTATTGGGTAAATTTCTTGCAGAT
CAACATGAAGGTGAATTTCATTGAGCTAATGCTGGTCAGAATGGTTTTGT
ATGGTTTTTGGCCTTCTATTTGTTATCTGCACACTTCTTGCAACATGACA
GAAATTTTGTCTTTTTGTTTTGTCTTGTTTTTGAATGTGACTTTTTTCTT
CCATAATTTTGTTAAAAATCTTCTTTGTGTTATCTTTACCTTTTTAAATT
CATTTACCTCTATAAATGATTATTGATAGGTTTGACCATTTCATAGTGTT
CCAGATTTCCTAGGTGTTTTATGTTTGAATCTTTTTAGATTTAAAATTTC
CTTTGATTAATGTATCCATTTTACTACCTTGTCCTCTTTTTATATGTCTT
TTAAGTTTTCGATGAAGTTTACCCACAAAATTTACATTTGAAATCTTGAA
GTTTTTTGTGTACACTTTTATTTTAGCTTGGGTTTTCTTTGGTGATTCAG
TTTGTCCATTAAATTGTTTTATGTCTTATTGATTTATTATTTCATTCACA
TTTAAAATAATCTCTTTTAAAAATAATCGTTTAAGTCATATATTCATGTC
CCTTTTTTGTGCCTTTTGACNAATAANTATAATAATAATAATAATA
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTATTATGGATCACAGTGATCATTGTA
ACATAAGCATATTCTAAGCAGGGGTATTTAGAAGGTTCAAAACATTACAG
TCATTAAAGTGTTATTGTGAGAGCAATCTTTATCCATCATATTAATATTG
TAATTAATGTCATGTTAGAACAACCAGCCCAATCCAAGCATAAGATCAAT
ATGTATCTCCTTTACAAATAAAGGCTGTAGTAACTAGATTTCAGCTTTCG
ATGATTGTCTTTATATTATTGAATTAGAAAGTGGAAATAGAGAAATGTAC
ATATCAGACAATTTAATTATATGTCAAATAAAGTATGCGGTCTTTGGGTG
CATGGTAGAATGTGAAATGTATGTCTTTAGAGTGTTACCTAAATCTACTG
GCATCTATCAACTTAGTCCAGTTGTCTCTTTACCTGAAATTGAAGGCTAG
TGTGCAGGTTCGTTTTATGGTAATCTCTCCTTTCAGTGTCACAGAGTTCA
AAGGCTCTCTGTAGGACCAGCATTACGTCACTGTGTGCACAGCAGCATTA
CGTCACTGTGTGCACAGCAGTAATGCTGTAGAATGGATCCCATCCTCTGC
AACCACGTCAGGTAACCCGAAAGAAAACCAAGTTGGAACTGCTCACCACA
TTCATTACTGGAGAAAGAGGGCTAAGATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_g05.g1 MSMg01no534_g05.g1 CHROMAT_FILE:
MSMg01no534_g05.g1 PHD_FILE: MSMg01no534_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:54 2005
         (641 letters)



>mm_chr10_124167748_124168788
          Length = 1041

 Score = 1239 bits (641), Expect = 0.0
 Identities = 641/641 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtattatggatcacagtgatcattgtaacataagcatattctaagcaggggtatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtattatggatcacagtgatcattgtaacataagcatattctaagcaggggtatttag 260

                                                                       
Query: 61  aaggttcaaaacattacagtcattaaagtgttattgtgagagcaatctttatccatcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttcaaaacattacagtcattaaagtgttattgtgagagcaatctttatccatcata 320

                                                                       
Query: 121 ttaatattgtaattaatgtcatgttagaacaaccagcccaatccaagcataagatcaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaatattgtaattaatgtcatgttagaacaaccagcccaatccaagcataagatcaata 380

                                                                       
Query: 181 tgtatctcctttacaaataaaggctgtagtaactagatttcagctttcgatgattgtctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatctcctttacaaataaaggctgtagtaactagatttcagctttcgatgattgtctt 440

                                                                       
Query: 241 tatattattgaattagaaagtggaaatagagaaatgtacatatcagacaatttaattata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatattattgaattagaaagtggaaatagagaaatgtacatatcagacaatttaattata 500

                                                                       
Query: 301 tgtcaaataaagtatgcggtctttgggtgcatggtagaatgtgaaatgtatgtctttaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcaaataaagtatgcggtctttgggtgcatggtagaatgtgaaatgtatgtctttaga 560

                                                                       
Query: 361 gtgttacctaaatctactggcatctatcaacttagtccagttgtctctttacctgaaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgttacctaaatctactggcatctatcaacttagtccagttgtctctttacctgaaatt 620

                                                                       
Query: 421 gaaggctagtgtgcaggttcgttttatggtaatctctcctttcagtgtcacagagttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaggctagtgtgcaggttcgttttatggtaatctctcctttcagtgtcacagagttcaa 680

                                                                       
Query: 481 aggctctctgtaggaccagcattacgtcactgtgtgcacagcagcattacgtcactgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggctctctgtaggaccagcattacgtcactgtgtgcacagcagcattacgtcactgtgt 740

                                                                       
Query: 541 gcacagcagtaatgctgtagaatggatcccatcctctgcaaccacgtcaggtaacccgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcacagcagtaatgctgtagaatggatcccatcctctgcaaccacgtcaggtaacccgaa 800

                                                    
Query: 601 agaaaaccaagttggaactgctcaccacattcattactgga 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaaaaccaagttggaactgctcaccacattcattactgga 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)