BAC Information

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BAC

Clone NameMSMg01-534H22
Chromosome10 (Build37)
Map Location 113,539,083 - 113,641,525
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042655, LOC100042666
Downstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534H22.T7 (MSMg01no534_h22.b1)MSMg01-534H22.TJ (MSMg01no534_h22.g1)
ACCAG602166AG602167
length771747
length of high quality
(start - end)		562 (36 - 597)168 (68 - 235)
definitionCHROMAT_FILE: MSMg01no534_h22.b1 PHD_FILE: MSMg01no534_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:02 2005CHROMAT_FILE: MSMg01no534_h22.g1 PHD_FILE: MSMg01no534_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,640,969 - 113,641,525)(113,539,083 - 113,539,247)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTC
ATCCAGTCTAGTCAAGAGAGGTCGTTCTGGGTTACATTTATTAATCTTGT
GAATCTTCCGTGGCTCTATATCCACTTTTGTAAATTCCATTTCTTTTTTT
ATTAATGTATCTAGTCACTATCAGATATTTTAATTTTATTTTTTGCTATC
ATTTTATCATTATTAAACAACCACAGTTATTAATTTAGTTATGTTTATTT
ACTTTACTCAGATTTATTTACTTTTGGTTCCTTTATCTCAAACAGTCAGT
AACCAATCTGAAAGGAAATTCAGTGGAAATAGCTTTAATTGAATAACAAA
TGGAGCAGGGCAGATTTCCAGGTATAGTAATATTACTGAAAATTAAATTG
TAGTGAGATATTAAAATAATCTATGAGAGTTAGATCGTGACCAAAAAGAA
ATGTTTACCTTTAATAAACCATAGAGACAGATGAAGTAGTAGAATATGGA
GAAATGACATATTTAGTTTCTGAGGCTTCTATGTGTTTATCAGTTATAAA
TGCTATAATGTTACAAGTGTTATAACATAAGAAATCCTTAAATGGTGCTT
TAATGGCTCTTNAATCCTANGCAGGAAGGGAGGGTACTCAGATGCCAGCA
GAAGCAGGCACGGGTGCTGTAGCTCTTTGTGGTAGAGCAAATAGACATGT
TTTAGTTAGCATTCTACCCAGTAACAATCATGGGTAGTACTCTCTCTCAA
ATGATCGCCCTAAAAAACAAT

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACATAAACGACGATTATAGGATTTTAGGGAGTT
AAGGATAGATGAGTATTCAAAATCGAATTTTTGCATATGTTATGAGGTTT
ATAAAATATTTGCCAAGGTATTTCTAAGTAGTCTATGAATAATAAAAGTA
CTGAGTTCTCACTTTATTGTCCATATGTAGAANATTTAATCCCCCCCCCC
CCCNAAAANCCCCCTTTTTTTCCCCCCCCCCCCCTCCCCCTCTCCTTTTC
TTCTTTTTAAAAAAAAAAAAAGGGGGGGGGGCCCCCCCCCCCCCCACCAG
GGGGCGGGGCCCGGCCACCGCTCCTCCCCCCTTTTTTTTGGGGGGGGGGG
GGGGGAGAAAAAATATNCCCCCCCCCCCCCCCCGCCCTTCCTCTTTTTTT
TTTTTTGAATTTTCGTTCACAGAGGAGATCCGCCTCTCCCTTCCACACTA
ACCGACAATTTTCATTTTTACCCCCCTCTTTTTCTTCTCCTTTCGTCGTG
GGCTTGGTGTTAGTTTTTTAATTTTTTTTCANACTTTTTTCCTTCTCCCC
CTTCCCCCCTGATACACGACTCTATTTCCCCTGTAGTATTTTCTTTTTCT
TTTCTTTCTTTTACCCTCTAGCTTTTTCTCTCCCCCCCTCTTCTCCCTCG
TTGTGTGTGGTGGCATTAACCTTTCCTCTCCGTCTCCCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_h22.b1 MSMg01no534_h22.b1 CHROMAT_FILE:
MSMg01no534_h22.b1 PHD_FILE: MSMg01no534_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:02 2005
         (562 letters)



>mm_chr10_113640764_113641725
          Length = 962

 Score = 1046 bits (541), Expect = 0.0
 Identities = 553/557 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcttttcatccagtctagtcaagagaggtcgttctgggttacatttattaatcttgt 65
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aattcttttcagccagtctagtcaagagaggtcgttctgggttacatttattaatcttgt 703

                                                                       
Query: 66  gaatcttccgtggctctatatccacttttgtaaattccatttctttttttattaatgtat 125
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 702 gaatcttccgtggctctatatccacttttgtaaattccatttcttattttattaatgtat 643

                                                                       
Query: 126 ctagtcactatcagatattttaattttattttttgctatcattttatcattattaaacaa 185
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 642 ctagtcactatcagatattttaattttaatttttgctatcattttatcattattaaacaa 583

                                                                       
Query: 186 ccacagttattaatttagttatgtttatttactttactcagatttatttacttttggttc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ccacagttattaatttagttatgtttatttactttactcagatttatttacttttggttc 523

                                                                       
Query: 246 ctttatctcaaacagtcagtaaccaatctgaaaggaaattcagtggaaatagctttaatt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ctttatctcaaacagtcagtaaccaatctgaaaggaaattcagtggaaatagctttaatt 463

                                                                       
Query: 306 gaataacaaatggagcagggcagatttccaggtatagtaatattactgaaaattaaattg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaataacaaatggagcagggcagatttccaggtatagtaatattactgaaaattaaattg 403

                                                                       
Query: 366 tagtgagatattaaaataatctatgagagttagatcgtgaccaaaaagaaatgtttacct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tagtgagatattaaaataatctatgagagttagatcgtgaccaaaaagaaatgtttacct 343

                                                                       
Query: 426 ttaataaaccatagagacagatgaagtagtagaatatggagaaatgacatatttagtttc 485
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 342 ttaataaaccatagagacagatgaagtagtagaatatggagaaatgacttatttagtttc 283

                                                                       
Query: 486 tgaggcttctatgtgtttatcagttataaatgctataatgttacaagtgttataacataa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tgaggcttctatgtgtttatcagttataaatgctataatgttacaagtgttataacataa 223

                            
Query: 546 gaaatccttaaatggtg 562
           |||||||||||||||||
Sbjct: 222 gaaatccttaaatggtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_h22.g1 MSMg01no534_h22.g1 CHROMAT_FILE:
MSMg01no534_h22.g1 PHD_FILE: MSMg01no534_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:02 2005
         (168 letters)



>mm_chr10_113538883_113539450
          Length = 568

 Score =  311 bits (161), Expect = 1e-89
 Identities = 164/165 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataaacgacgattataggattttagggagttaaggatagatgagtattcaaaatcgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 acataaacgacgattataggattttagggagttaaggatagatgagtattcaaaatcaaa 260

                                                                       
Query: 61  tttttgcatatgttatgaggtttataaaatatttgccaaggtatttctaagtagtctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttgcatatgttatgaggtttataaaatatttgccaaggtatttctaagtagtctatg 320

                                                        
Query: 121 aataataaaagtactgagttctcactttattgtccatatgtagaa 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataataaaagtactgagttctcactttattgtccatatgtagaa 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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