Query= MSMg01no534_m04.b1 MSMg01no534_m04.b1 CHROMAT_FILE:
MSMg01no534_m04.b1 PHD_FILE: MSMg01no534_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:23 2005
(684 letters)
>mm_chr10_114088218_114089301
Length = 1084
Score = 1280 bits (662), Expect = 0.0
Identities = 675/680 (99%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 5 gaattcaacactcctactaaatgctaattgagtgtctattaggtactacctacgcaagta 64
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaatttaacactcctactaaatgctaattgagtgtctattaggtactatctacgcaagta 264
Query: 65 taggatgcaaaaatgctgcataaattgtttctcttctcaagaattctaatgttagaatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taggatgcaaaaatgctgcataaattgtttctcttctcaagaattctaatgttagaatat 324
Query: 125 acaaaccataacaaaataagtaggaatggttagtggttagaatttaattaaatgggcata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaaccataacaaaataagtaggaatggttagtggttagaatttaattaaatgggcata 384
Query: 185 ataaaaattcatgttagaagagagagcactgagcaaagagagaggtgtcttcagagataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaaattcatgttagaagagagagcactgagcaaagagagaggtgtcttcagagataa 444
Query: 245 gctggccactgcactcagccatatgatgatttttacggctgttgtaccttccatcttgta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctggccactgcactcagccatatgatgatttttacggctgttgtaccttccatcttgta 504
Query: 305 tattgtacaacaagcttaacgcattaaagcaacctaatttatgccacaagtttgacagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tattgtacaacaagcttaacgcattaaagcaacctaatttatgccacaagtttgacagat 564
Query: 365 ttgaatccaacatgggtctctggagactaaaagcaagcatctggcagtactgtgatctct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgaatccaacatgggtctctggagactaaaagcaagcatctggcagtactgtgatctct 624
Query: 425 gcagacaaaaaagatgtgaggaattgaactgtgttctcaaaaattaaaaaaaaaaagtaa 484
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 gcagacaaaaaggatgtgaggaattgaactgtgttctcaaaaattaaaaaaaaa--gtaa 682
Query: 485 agcctgaatatatatatgatctttgtagaatcaacctggttaagatgaggtgactagggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agcctgaatatatatatgatctttgtagaatcaacctggttaagatgaggtgactagggt 742
Query: 545 atgacctaatccaatgtaactattaaccttgtaaagaagggggaaagacacttaaagaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atgacctaatccaatgtaactattaaccttgtaaagaagggggaaagacacttaaagaca 802
Query: 605 gatacacaggatggtaactcgttattgcagacacagcagttggagtgatgtagaggctag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gatacacaggatggtaactcgttattgcagacacagcagttggagtgatgtagaggctag 862
Query: 665 ctaaggaacatgcacttatt 684
||||||||||||||||||||
Sbjct: 863 ctaaggaacatgcacttatt 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_m04.g1 MSMg01no534_m04.g1 CHROMAT_FILE:
MSMg01no534_m04.g1 PHD_FILE: MSMg01no534_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:23 2005
(649 letters)
>mm_chr10_114226563_114227611
Length = 1049
Score = 1212 bits (627), Expect = 0.0
Identities = 642/647 (99%)
Strand = Plus / Minus
Query: 2 aggcccagctttggtataattgcctgtgtgtctatggacaaaccttactgggtgtacatt 61
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 848 aggcccagctttggtataattgcctgtgtgtctatggacaaacattactgggtgtacatt 789
Query: 62 tttattttagcaatttataggactaatatttcttccacctttaatcttttgtttgtatga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tttattttagcaatttataggactaatatttcttccacctttaatcttttgtttgtatga 729
Query: 122 agatttataactaaaacttctttcccacatattattatgttttatcattttggcagttta 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agatttataactaaaacttctttcccacatattattatgttttatcattttggcagttta 669
Query: 182 gtgagaaaggccaagaaaacaatattttctttttactaatgaaaaaataagtttaggcag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 668 gtgagaaaggccaagaaaacaatattttctttttactaatgaaaaaataagtttaagcag 609
Query: 242 ttaaatggcatgccaggtctggtatgttcgagcctagtgctatttgaatgatactttcaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaaatggcatgccaggtctggtatgttcgagcctagtgctatttgaatgatactttcaa 549
Query: 302 cccttcccaaacaatcatttaaaaaacaaaaccctcttcctttgctttatttcaaaaatg 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cccttcccaaacaatcatttaaaaaacaaaaccctcttcctttgctttatttcaaaaatt 489
Query: 362 aaactttaaaatgtataaatggtaaaaagtttgtgctccatacttctaaaaacagtgtga 421
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 488 aaactttaaaatgtataaatggtaaaaagtttgtgcttcatacttctaaaaacagtgtga 429
Query: 422 atatttatacctcatgttttccccagagatagccaatgcaacctaaaagatatggcaaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atatttatacctcatgttttccccagagatagccaatgcaacctaaaagatatggcaaca 369
Query: 482 tatagagattggatagcaaatcaaattcaagatgcattcttacatgtagtgatggctaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tatagagattggatagcaaatcaaattcaagatgcattcttacatgtagtgatggctaac 309
Query: 542 atctgcctgcatcacaggctgagaatcaattgtaaagccaagtttaagttctgtatgaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atctgcctgcatcacaggctgagaatcaattgtaaagccaagtttaagttctgtatgaaa 249
Query: 602 gtatattatgcaatattagccaacatacaccctgagttatatcaagg 648
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtatatcatgcaatattagccaacatacaccctgagttatatcaagg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
