BAC Information

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BAC

Clone NameMSMg01-535D22
Chromosome10 (Build37)
Map Location 102,058,125 - 102,058,652
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535D22.T7 (MSMg01no535_d22.b1)MSMg01-535D22.TJ (MSMg01no535_d22.g1)
ACCAG602739AG602740
length786784
length of high quality
(start - end)
490 (51 - 540)530 (80 - 609)
definitionCHROMAT_FILE: MSMg01no535_d22.b1 PHD_FILE: MSMg01no535_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005CHROMAT_FILE: MSMg01no535_d22.g1 PHD_FILE: MSMg01no535_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTTTATATTTTCTTTTTTTTCCCCATTTTTTATTAGGTA
TTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCAC
CCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTC
CCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCC
AGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAG
AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC
AGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCC
CTGTGATCCATCCATGACCTGACTGTGAGCATCCACTTCTGTGTTTGCTA
GGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATA
AAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGG
GGTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCA
GCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGAGAAATTCTGGCG
GAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAA
ACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAGTAGAAT
TGAAGACCCGAAATGAACCCACACACCTACTGTCAC
TTTTACAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATACTTTACTTCCTAATC
TAAGGTAGACATCCATCATCCATCAATTTCTTATTATATTAAAGAGTGTT
GTCGTCTTGTTTCAAGAATATTGTTCCATTATCTATGAGTCTTATCTAGT
GATATCAAAGTGTATATTAAATTAATATATAAGCACTTAATCCATTTAGA
TACATACAGTTTCTAGTTGTAGAACTACTATCTTTCATGTTGTATATCTT
GACAGCAATATATAATGTTTATTTTTAGTTTTTAGTATGTCTTTTTATTT
CTTTCTAGATTTAACAAAATGTCTAAATTATGTAGGTGATTTTCATTTGC
CCTAATGCATACTTTTCAGCTATAGATTGTGTTTTCAAAGGGTTTCTTCT
GGCTGGTTGTTGTGTTTTTCAGTGCTGATGATCAGCTTCGTGAGATTTAG
TATCTCCATGGATAGAAATGTCCCTACTTGTCTAGGCATGCAGTCAGATT
GAGTGCACTAATAAGAAAGAAGTGAAAAGTTTCCCCCTTGGTGTCATTTA
ACCCAAGGCGAACCCAGACTTGAATTCGCTAATTCATAATCACTGTCTAC
TGTCTTTCCACTTTGTGAGTCTGAATCTGTGCCTTTGTAAAGGATGTGAT
CTCTGTCTCTCTGTCTGCTGAGATACTCTGTGTGTCTCTGCATCTGTCAT
TTGCTGAATCTATGTCTATCTGTCCCTAACGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_d22.g1 MSMg01no535_d22.g1 CHROMAT_FILE:
MSMg01no535_d22.g1 PHD_FILE: MSMg01no535_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:00 2005
         (530 letters)



>mm_chr10_102057925_102058852
          Length = 928

 Score =  920 bits (476), Expect = 0.0
 Identities = 516/530 (97%), Gaps = 2/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatactttacttcctaatctaaggtagacatccatcatccatcaatttcttattatat 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttaatattttacttcctaatctaaggtagacatccatcatccatcaatttcttattttat 260

                                                                       
Query: 61  taaagagtgttgtcgtcttgtttcaagaatattgttccattatctatgagtcttatctag 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 taaaaagtgttgtcgtcttgtttcaagaatattgttccattatctatgagccttatctag 320

                                                                       
Query: 121 tgatatcaaagtgtatattaaattaatatataagcacttaatccatttagatacatacag 180
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 tgatatcaaagtgtatactaaattaatatataagcacttaatccatttagatacata--g 378

                                                                       
Query: 181 tttctagttgtagaactactatctttcatgttgtatatcttgacagcaatatataatgtt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 tttctagttgtagaactactatctttcatgttgtatatattgacagcaatatataatgtt 438

                                                                       
Query: 241 tatttttagtttttagtatgtctttttatttctttctagatttaacaaaatgtctaaatt 300
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 tatttttagtttttagtaagtctttttatttctttctagatttaacaaaatgtctaaagt 498

                                                                       
Query: 301 atgtaggtgattttcatttgccctaatgcatacttttcagctatagattgtgttttcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atgtaggtgattttcatttgccctaatgcatacttttcagctatagattgtgttttcaaa 558

                                                                       
Query: 361 gggtttcttctggctggttgttgtgtttttcagtgctgatgatcagcttcgtgagattta 420
           |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 559 gggtttcttctgactggttgttgtgtttttcagtgctgatgatcagcttcctgagactta 618

                                                                       
Query: 421 gtatctccatggatagaaatgtccctacttgtctaggcatgcagtcagattgagtgcact 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 619 gtatctccatggatagaaatgtccctacttgtctaggcatgcagtcagattgcgtgcact 678

                                                             
Query: 481 aataagaaagaagtgaaaagtttcccccttggtgtcatttaacccaaggc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aataagaaagaagtgaaaagtttcccccttggtgtcatttaacccaaggc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space:   477360
Effective search space used:   477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)