BAC Information

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BAC

Clone NameMSMg01-535D23
Chromosome10 (Build37)
Map Location 102,058,125 - 102,058,696
singlet/doubletsinglet
Overlap genenone
Upstream geneMgat4c, LOC667652, Nts, Pamci
Downstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535D23.T7 (MSMg01no535_d23.b1)MSMg01-535D23.TJ (MSMg01no535_d23.g1)
ACCAG602741AG602742
length754757
length of high quality
(start - end)
665 (50 - 714)575 (87 - 661)
definitionCHROMAT_FILE: MSMg01no535_d23.b1 PHD_FILE: MSMg01no535_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005CHROMAT_FILE: MSMg01no535_d23.g1 PHD_FILE: MSMg01no535_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTATATTTTCTTTTTTTTCCCCATTTTTTATTAGGTAT
TTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACC
CACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCC
CCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCA
GTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGA
GCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCA
GATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCC
TGTGATCCATCCATGACCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG
GCCCCGGTATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAATAA
AATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGG
GTGGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAG
CTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGAGAAATTCTGGCGG
AATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA
CTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATT
GAAA
NCTTTTTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATACTTTACTT
CCTAATCTAAGGTAGACATCCATCATCCATCAATTTCTTATTATATTAAA
GAGTGTTGTCGTCTTGTTTCAAGAATATTGTTCCATTATCTATGAGTCTT
ATCTAGTGATATCAAAGTGTATATTAAATTAATATATAAGCACTTAATCC
ATTTAGATACATACAGTTTCTAGTTGTAGAACTACTATCTTTCATGTTGT
ATATCTTGACAGCAATATATAATGTTTATTTTTAGTTTTTAGTATGTCTT
TTTATTTCTTTCTAGATTTAACAAAATGTCTAAATTATGTAGGTGATTTT
CATTTGCCCTAATGCATACTTTTCAGCTATAGATTGTGTTTTCAAAGGGT
TTCTTCTGGCTGGTTGTTGTGTTTTTCAGTGCTGATGATCAGCTTCGTGA
GATTTAGTATCTCCATGGATAGAAATGTCCCTACTTGTCTAGGCATGCAG
TCAGATTGAGTGCACTAATAAGAAAGAAGTGAAAAGTTTCCCCCTTGGTG
TCATTTAACCCAAGGCGAACCCAGACTTGAATTCGCTAATTCATAATCAC
TGTCTACTGTCTTTCCACTTTGTGAGTCTGAATCTGTGCCTTTGTAAAGG
ATGTGATCTCTGTCTCTCTGTCTGCTGAGNTACTCTGTGTGTCTCTGCAT
CTGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_d23.g1 MSMg01no535_d23.g1 CHROMAT_FILE:
MSMg01no535_d23.g1 PHD_FILE: MSMg01no535_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:00 2005
         (575 letters)



>mm_chr10_102057925_102058897
          Length = 973

 Score =  969 bits (501), Expect = 0.0
 Identities = 556/575 (96%), Gaps = 3/575 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaatactttacttcctaatctaaggtagacatccatcatccatcaatttcttattatat 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttaatattttacttcctaatctaaggtagacatccatcatccatcaatttcttattttat 260

                                                                       
Query: 61  taaagagtgttgtcgtcttgtttcaagaatattgttccattatctatgagtcttatctag 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 taaaaagtgttgtcgtcttgtttcaagaatattgttccattatctatgagccttatctag 320

                                                                       
Query: 121 tgatatcaaagtgtatattaaattaatatataagcacttaatccatttagatacatacag 180
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |
Sbjct: 321 tgatatcaaagtgtatactaaattaatatataagcacttaatccatttagatacata--g 378

                                                                       
Query: 181 tttctagttgtagaactactatctttcatgttgtatatcttgacagcaatatataatgtt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 tttctagttgtagaactactatctttcatgttgtatatattgacagcaatatataatgtt 438

                                                                       
Query: 241 tatttttagtttttagtatgtctttttatttctttctagatttaacaaaatgtctaaatt 300
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 tatttttagtttttagtaagtctttttatttctttctagatttaacaaaatgtctaaagt 498

                                                                       
Query: 301 atgtaggtgattttcatttgccctaatgcatacttttcagctatagattgtgttttcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atgtaggtgattttcatttgccctaatgcatacttttcagctatagattgtgttttcaaa 558

                                                                       
Query: 361 gggtttcttctggctggttgttgtgtttttcagtgctgatgatcagcttcgtgagattta 420
           |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 559 gggtttcttctgactggttgttgtgtttttcagtgctgatgatcagcttcctgagactta 618

                                                                       
Query: 421 gtatctccatggatagaaatgtccctacttgtctaggcatgcagtcagattgagtgcact 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 619 gtatctccatggatagaaatgtccctacttgtctaggcatgcagtcagattgcgtgcact 678

                                                                       
Query: 481 aataagaaagaagtgaaaagtttcccccttggtgtcatttaacccaaggcgaacccagac 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 679 aataagaaagaagtgaaaagtttcccccttggtgtcatttaacccaaggcgagcccagac 738

                                              
Query: 541 ttgaattcgctaattcataatcactgtctactgtc 575
           |||||||| ||||||||||||| | |||| |||||
Sbjct: 739 ttgaattctctaattcataatccc-gtcttctgtc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 973
Length adjustment: 10
Effective length of query: 565
Effective length of database: 963
Effective search space:   544095
Effective search space used:   544095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)