Query= MSMg01no535_h03.b1 MSMg01no535_h03.b1 CHROMAT_FILE:
MSMg01no535_h03.b1 PHD_FILE: MSMg01no535_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:16 2005
(660 letters)
>mm_chr10_45058574_45059633
Length = 1060
Score = 866 bits (448), Expect = 0.0
Identities = 468/478 (97%), Gaps = 8/478 (1%)
Strand = Plus / Minus
Query: 4 ggaattcatgttgaaaagtcctataaagacaaacacacagacagtcatcaacgttcacgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ggaattcatgttgaaaagtcctataaagacaaacacacagacagtcatcaacgttcacgg 413
Query: 64 cctgtgacaggtaatatgccaaaattatttttatggattacatgttggtagacagagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cctgtgacaggtaatatgccaaaattatttttatggattacatgttggtagacagagttt 353
Query: 124 tctggtacttaatcacgtacataggttcaaacgccagttctgtcgcagagtaggtacgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tctggtacttaatcacgtacataggttcaaacgccagttctgtcgcagagtaggtacgtc 293
Query: 184 ttttccctatctgtcataatgatcccccatttgcctcatgatgaaatgaatcatctcaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttttccctatctgtcataatgatcccccatttgcctcatgatgaaatgaatcatctcaga 233
Query: 244 gagttcacgccaatttccgacaatgtaaagttgcttacattcagggagtctttcaccttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gagttcacgccaatttccgacaatgtaaagttgcttacattcagggagtctttcaccttc 173
Query: 304 agttaaacctctctggaaacacatacgcacacgcacacactcacacacacactcacacac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agttaaacctctctggaaacacatacgcacacgcacacactcacacacacactcacacac 113
Query: 364 acacactcacacacacactctcacacacacacactcacacacacactc--acacacacac 421
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 112 acactctcacacacacactc----acacacacactcacacacacactctcacacacacac 57
Query: 422 tcacacacacacactcacacactcactcacacacacacacactcacacactcacactc 479
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 56 tcacacacacacactcacacacacactcacacacacacac--tcacacactcacactc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_h03.g1 MSMg01no535_h03.g1 CHROMAT_FILE:
MSMg01no535_h03.g1 PHD_FILE: MSMg01no535_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:16 2005
(648 letters)
>mm_chr10_44904875_44905925
Length = 1051
Score = 1120 bits (579), Expect = 0.0
Identities = 632/651 (97%), Gaps = 3/651 (0%)
Strand = Plus / Plus
Query: 1 acttcaacaataggcatcctatagtagtgtagacgttggtccttcttagtgctgtgttca 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 acttcaacaataggcatcctatagtagtgtagacattggtccttcttagtgctgtgttca 260
Query: 61 actaaccaggttgtggcctcagtgtgatagaattttatagactgatgggcaaccaggtag 120
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct: 261 actaaccaggttgtggcctcagtgtgacagagttttatagattgatgggcaaccaggtag 320
Query: 121 gcatagaaacatatagttggttgatccgtagtgattgtatctagagctgaactagacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatagaaacatatagttggttgatccgtagtgattgtatctagagctgaactagacaga 380
Query: 181 aaaatctacattccctattgaccgggaaggtacctgaaagtctacctcagcccagggaaa 240
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 aaaatctatgttccctattgaccgggaagatacctgaaagtctacctcagcccagggaaa 440
Query: 241 ggcttgagggatgaaattccttttttt---agcacatccctgattcatgctgtacaaccc 297
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 ggcttgagagatgaaattccttttttttttagcacatccctgattcatgctgtacaaccc 500
Query: 298 accacaataaaccagagaatagattgcccgctagtgcttaaaacggagcagcacatcaag 357
|||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 501 accacaataagccagagaatagattgcccgttagtgcttaaaacagagcagcacatcaag 560
Query: 358 cctgagttcactgtaagcctggatgtgggtctccatctagtgttgacataagagcaatga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgagttcactgtaagcctggatgtgggtctccatctagtgttgacataagagcaatga 620
Query: 418 cctcagattgagagaaactaagataaagaagctctacaaagagcagaacaggggtggatt 477
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 cctcagattgagagaaactaagataaagaagctctacaaagagcagagcaggggtggatt 680
Query: 478 aagaacatggaaatagtcctgcctgcctgcctgtgctctgtgtacacaccccttccaagt 537
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 681 aagaacatggaaatagtcctgcttgcctgcctgtgctctgtgtacacacccctttcaagt 740
Query: 538 agagagccctaaatcccccactcaacaaagtgactcctaatagcatattattgtatccat 597
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagagccctaactcccccactcaacaaagtgactcctaatagcatattattgtatccat 800
Query: 598 agaccattacctcactcagcccacatcagagaagcttcttcttgcagtaga 648
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaccattatctcactcagcccacatcagagaagcttcttcttgcagtaga 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1051
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1041
Effective search space: 664158
Effective search space used: 664158
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
