BAC Information

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BAC

Clone NameMSMg01-536H09
Chromosome10 (Build37)
Map Location 52,520,678 - 52,521,014
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536H09.T7 (MSMg01no536_h09.b1)MSMg01-536H09.TJ (MSMg01no536_h09.g1)
ACCAG603668AG603669
length805793
length of high quality
(start - end)		340 (48 - 387)572 (80 - 651)
definitionCHROMAT_FILE: MSMg01no536_h09.b1 PHD_FILE: MSMg01no536_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:34 2005CHROMAT_FILE: MSMg01no536_h09.g1 PHD_FILE: MSMg01no536_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACTGGATTACTTAGAAAGAAGCTGAGGTGTAAAGAAAAATCA
GAGACACTTTGAAAGAAGGGTGGATCAAAGAGGAACTAAGTAGGGAAGCT
CACATGTGGATTTTGGTCCACACTGTGATTTGAGCCTATCTTTAAAGCTG
CAAAGGTGGTGGGAAAAAGTGGGGGAGAGTAGGAAGAGAGAAAGAGGGAT
GCAAGAGATGGATGGAGGGAGGGAGAGAGAATTTCCTACATCCATAAAGT
GTTAAGTTTAAACCCTACCCAGAGTCATACCCTGCTATATTTCGTTTGCC
AAAGTAAGTTATGTGTAAGTAAGTTTTGTGTGTGTGCGTGTGTGAGTGTG
TTTATGCATGCGTTTGTGCCATTCTTCCTCTCTACTGCCCCACCCCTTAT
TTCCCCCCTATTCACCCCATTAGTGTAATTCCCTATTTTTCCCCCCTTTC
CTCCTTATCCGCTTTCTCCCCCTTTTATCCCATTTTTTTTACCTCATTCC
GCCTTAAGTCTATTACCCCTTTTTCCCTCTATTTCCCCTTTCATATTTGT
TTTATTTATCCCATTTTTTCTACCTTTTCCTTCTCTTATTCTCCCAGTTT
TATGTTCTTTCTTCCCCTTTATTGTTAGCTCCTTCCTTTCCTTTCTTTAT
TTCTCTTTTACTTTTTCCTTTCCTTTCCGACACTTTTATCTATTACCATT
TTTCCGGTTCGTTTTTCTATAAACCTCGCGATCCATACCGATCCTCTATA
TTTTT

NNCCCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACAAATGGC
TGAGAGGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAACTGC
AAATCAAAACAACCCTGCGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGTTGGCGAGGATGGGGAGAAAGATG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCCTGTACAACCACTCTGGA
AATCAGCGATTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGATGTCCCAACCGGTAAGAAGGACA
CATGCTCCACTATGTTCACAGGAGCCTTATTTATAATAGTCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATATAGTA
TATTTACACAATGGAGTACTACTCAACTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
AACCAATCACAAAAGAACTCACAAAATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCAAAAC
ACATGAAACTCACGAAGAACGAAGACAAAGTGTGGACACTTTGCCCCTTC
TTTAGAATGGGACAAACAACCATGTAAGGAGTTACAGAGACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_h09.b1 MSMg01no536_h09.b1 CHROMAT_FILE:
MSMg01no536_h09.b1 PHD_FILE: MSMg01no536_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:34 2005
         (340 letters)



>mm_chr10_52520475_52521213
          Length = 739

 Score =  530 bits (274), Expect = e-155
 Identities = 322/338 (95%), Gaps = 3/338 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaactggattacttagaaagaagctgaggtgtaaagaaaaatcagagacacttt 63
           ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactgga-gacttagacagaagctgaggtgtaaagaaaaatcagagacacttt 262

                                                                       
Query: 64  gaaagaagggtggatcaaagaggaactaagtagggaagctcacatgtggattttggtcca 123
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaagaagtgtggatcaaagaagaactaagtagggaagctcacatgtggattttggtcca 322

                                                                       
Query: 124 cactgtgatttgagcctatctttaaagctgcaaaggtggtgggaaaaagtgggggagagt 183
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 323 cactgtgatttgagcctatctttaaagctgcaaaggtggtggggaaaagtgggggagaat 382

                                                                       
Query: 184 aggaagagagaaagagggatgcaagagatggatggagggagggagagagaatttcctaca 243
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 aggaagagagaaagagggaagcaagagatggatggagggagggagagagaatttcctaga 442

                                                                       
Query: 244 tccataaagtgttaagtttaaaccctacccagagtcataccc-tgctatatttcgtttgc 302
           | |||| |||| ||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 443 ttcatacagtgctaactttaaaccctacccagagtcatacccctgctatatttagtttgc 502

                                                 
Query: 303 caaagtaagttatgtgtaagtaagttt-tgtgtgtgtg 339
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 503 caaagtaagttatgtgtaagtaagtttgtgtgtgtgtg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 739
Length adjustment: 9
Effective length of query: 331
Effective length of database: 730
Effective search space:   241630
Effective search space used:   241630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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