Query= MSMg01no536_l21.b1 MSMg01no536_l21.b1 CHROMAT_FILE:
MSMg01no536_l21.b1 PHD_FILE: MSMg01no536_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
(570 letters)
>mm_chr10_90329086_90330055
Length = 970
Score = 920 bits (476), Expect = 0.0
Identities = 495/506 (97%), Gaps = 8/506 (1%)
Strand = Plus / Minus
Query: 73 cagagacacagccgctgaactgaatcaattttacaagctgcaataagaacagctccttga 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 cagagacacagccgctgaactgaatcaattttacaagctgcaataagaacagctccttga 911
Query: 133 aacaaatacaaacggaacgaaccgttctcaccatatgtttcacgtaggcccttcacgttt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 aacaaatacaaacggaacgaaccgttctcaccatatgtttcacgtaggcccttcacgttt 851
Query: 193 cctcccaacctgagatgcttttcaaaaccattctgttaatgtacatatgtgattctgcaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cctcccaacctgagatgcttttcaaaaccattctgttaatgtacatatgtgattctgcaa 791
Query: 253 tcttaaaagatc--------aaaaaaaaaaacccaaacatatgctgtcccacagtcctga 304
|||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 790 tcttaaaagatcaaaaaaaaaaaaaaaaaaaaccaaacatacgctgtcccacagtcctga 731
Query: 305 atagacaaatgggcagcattttcatacctggatgctaaacacagacagtgaaaccctttc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atagacaaatgggcagcattttcatacctggatgctaaacacagacagtgaaaccctttc 671
Query: 365 catgaacaaagggatttgagagggaccatgggctctttttagttgcaagcctaagctttt 424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 670 catgaacaaagggatttgagagggaacatgggctctttttagttgcaagcctaagctttt 611
Query: 425 ctttgccagctccttgcggaaaggccaactggagcaaagtcctctgaattttaaggatgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctttgccagctccttgcggaaaggccaactggagcaaagtcctctgaattttaaggatgt 551
Query: 485 gtttcagtgagcttcaccttttgtggtctgtctctcctctttagatacacaagcatgctt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtttcagtgagcttcaccttttgtggtctgtctctcctctttagatacacaagcatgctt 491
Query: 545 catgcttactgaatgaatactaatgt 570
||||||||||||||||||||||||||
Sbjct: 490 catgcttactgaatgaatactaatgt 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l21.g1 MSMg01no536_l21.g1 CHROMAT_FILE:
MSMg01no536_l21.g1 PHD_FILE: MSMg01no536_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
(529 letters)
>mm_chr10_90194386_90195314
Length = 929
Score = 936 bits (484), Expect = 0.0
Identities = 518/530 (97%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 1 accagccatacgcgtgtggtcatgtatcacttaacgatgggaattcgttctgagaagtgt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagccatatgcgtgtggtcatgtatcacttaacgatgggaattcgttctgagaagtgt 260
Query: 61 gtcattggggagtttcatcgttgtacaatagtcacagtttacttagcacaaaggaaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcattggggagtttcatcgttgtacaatagtcacagtttacttagcacaaaggaaagca 320
Query: 121 actgtgacatcactgtgatatgtgatcttctgggaccactgttgcacacataagtcatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtgacatcactgtgatatgtgatcttctgggaccactgttgcacacataagtcatca 380
Query: 181 ctgacttgtgcagtgctcaactatgtagacccaattaagtgatacacaactatgtgcatg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgactggtgcagtgctcaactatgtagacccaattaagtgatacacaactatgtgcatg 440
Query: 241 tgtgtactcacgaatccccataatgccctgcagtgcgggcagaatcatcattattatttg 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgtactcacgaatccccacaatgccctgcagtgcgggcagaatcatcattattatttg 500
Query: 301 cccccattgtaaaaatgatggaagcttcatgtggtttatagtcaaataatgaggtttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccccattgtaaaaatgatggaagcttcatgtggtttatagtcaaataatgaggtttaaa 560
Query: 361 agtgtgctgtaagctgggcgtggtggtgcacgcctttaatcccagcactcgggaggcaga 420
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 561 agtgtgctgtaagctgggcgtggtggcgcacgcctttaatcccagcactctggaggcaga 620
Query: 421 ggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagcc 680
Query: 481 agggctatacagagaagccctgtctcaacacccc-cccca--agagtgta 527
|||| || |||||||| |||||||||||| |||| ||||| ||||||||
Sbjct: 681 agggatacacagagaaaccctgtctcaactcccctccccacaagagtgta 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
