BAC Information

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BAC

Clone NameMSMg01-537C20
Chromosome10 (Build37)
Map Location 93,062,107 - 93,235,610
singlet/doubletdoublet
Overlap geneLOC100041873, Ntn4, LOC667338
Upstream geneNedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf
Downstream geneLOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C20.T7 (MSMg01no537_c20.b1)MSMg01-537C20.TJ (MSMg01no537_c20.g1)
ACCAG604210AG604211
length756761
length of high quality
(start - end)		642 (50 - 691)283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no537_c20.b1 PHD_FILE: MSMg01no537_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:29 2005CHROMAT_FILE: MSMg01no537_c20.g1 PHD_FILE: MSMg01no537_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,062,107 - 93,062,745)(93,235,328 - 93,235,610)
sequence
NNCCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATTGAAGCTGAACTTAGCCATTGTTCTCTGAAAAAAAAAT
TATTAAGAAAATTACCACATAAAAAAGGATGCCAAATGACTCCCTAGAGA
GCCACAGAGACTTTCTGACTTCTAAGAGGCATCCCAGATACCACCAAAAA
GGTACAAGCATAACTAAAGCCCACGGCTTCCAGTAAGATCACAAGACAAC
CAAATCGGTATCTTGTTTTTCTATTCCTGGAGCAACCTTCAGATAAGCCA
AGTTTATTTATTTCATATATAAAGCATAAAGCGAGGGCTTGTTTTTGTTT
GCTTTTATAAGTAGGCTACCTTTATCTTCCAACAACTTTGCTCATGTACA
CACAATCTTGATCATATCCCAACCAAGTTCCCCTCCCTTCTCCCAGACAC
CCTCAGCATGTCCTCTCCCAACTCATGTCCTCGCCTTAAAAAAAAAAACA
AACCAACACACCAAGCCAAATGTTGCTTCCTGTTGGGATGCTGACTGACT
TTGTATGGGTACCTACAGGGATGGTAGATGTAATCCCATCAACACAATGT
CGGTGTCATCTCCAAAAGGCAGCATCTCACAGCAGGGCTCCCCAGCCACC
AACTCTCACAGTCTTTACACACAGCCCTCCCCTCTTCTGCAATGGTTGCA
GAACATGGTGGTGGGCAGTTGCTCCCGATGTTCTGTTCAGAGCCTCGCGC
TCACTG

TTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCTTGCGACTTA
GTGAGACTTTGTCTCACCTCATCTTTCCTCCGACCAAAGAGTGATATTCT
ATTTCTCTCCCTCTACTCAGTTCCCCAACACCCCAGAATATGTCCTGCCC
TCTTGACCTCTTCTTAACTACTCCCCATATAGTCATGTGTGGTCCAGTGT
AGAAGAGAGTTCAAGTTGTACCCCTCAGTCATATGTGAGCCTTAGACAGC
TTTAAAGCCCAACGTTCTATCCTTCCTTCCTTCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTTTTCTTCTTTCTTTCT
TTCTTTCTTCTCTTGGTCTTTTCCACCACNGGCCTTCTCTGTGTTTCCCT
GTTTTTCTTGGTTTNTTCTGTGGATCGGGCTGGCCTCTTTCTCAGAGATC
GACCTATGTCGGCAGTCTCTTAGATATTCTGGATAAAGGCATATGCCACT
ACTGCTTAGCAGGTTTTTTGGCTTTTCTATGAGAGTGGTACTGCGTATCC
CAGAGTTCTTTTGAGTTGGTGTCAACTTCTTGCTTTCGTGGGTCCGAGGG
TGAGATTACCTGCCTTATGGTGTCTCTCTAGTGTGAAAGGCTTATAATTA
TACCTGTAGCCAGGTGTCGGTTATTATATAAAAAAAGACATGAAAAAATA
TAGTTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c20.b1 MSMg01no537_c20.b1 CHROMAT_FILE:
MSMg01no537_c20.b1 PHD_FILE: MSMg01no537_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:29 2005
         (642 letters)



>mm_chr10_93061904_93062945
          Length = 1042

 Score = 1228 bits (635), Expect = 0.0
 Identities = 638/639 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccattgaagctgaacttagccattgttctctgaaaaaaaaattattaagaaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccattgaagctgaacttagccattgttctctgaaaaaaaaattattaagaaaat 263

                                                                       
Query: 64  taccacataaaaaaggatgccaaatgactccctagagagccacagagactttctgacttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taccacataaaaaaggatgccaaatgactccctagagagccacagagactttctgacttc 323

                                                                       
Query: 124 taagaggcatcccagataccaccaaaaaggtacaagcataactaaagcccacggcttcca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taagaggcatcccagataccaccaaaaaggtacaagcataactaaagcccacggcttcca 383

                                                                       
Query: 184 gtaagatcacaagacaaccaaatcggtatcttgtttttctattcctggagcaaccttcag 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaagatcacaagacaaccaaatcagtatcttgtttttctattcctggagcaaccttcag 443

                                                                       
Query: 244 ataagccaagtttatttatttcatatataaagcataaagcgagggcttgtttttgtttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataagccaagtttatttatttcatatataaagcataaagcgagggcttgtttttgtttgc 503

                                                                       
Query: 304 ttttataagtaggctacctttatcttccaacaactttgctcatgtacacacaatcttgat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttataagtaggctacctttatcttccaacaactttgctcatgtacacacaatcttgat 563

                                                                       
Query: 364 catatcccaaccaagttcccctcccttctcccagacaccctcagcatgtcctctcccaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catatcccaaccaagttcccctcccttctcccagacaccctcagcatgtcctctcccaac 623

                                                                       
Query: 424 tcatgtcctcgccttaaaaaaaaaaacaaaccaacacaccaagccaaatgttgcttcctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatgtcctcgccttaaaaaaaaaaacaaaccaacacaccaagccaaatgttgcttcctg 683

                                                                       
Query: 484 ttgggatgctgactgactttgtatgggtacctacagggatggtagatgtaatcccatcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgggatgctgactgactttgtatgggtacctacagggatggtagatgtaatcccatcaa 743

                                                                       
Query: 544 cacaatgtcggtgtcatctccaaaaggcagcatctcacagcagggctccccagccaccaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacaatgtcggtgtcatctccaaaaggcagcatctcacagcagggctccccagccaccaa 803

                                                  
Query: 604 ctctcacagtctttacacacagccctcccctcttctgca 642
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctctcacagtctttacacacagccctcccctcttctgca 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_c20.g1 MSMg01no537_c20.g1 CHROMAT_FILE:
MSMg01no537_c20.g1 PHD_FILE: MSMg01no537_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:29 2005
         (283 letters)



>mm_chr10_93235171_93235853
          Length = 683

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccttgcgacttagtgagactttgtctcacctcatctttcctccgaccaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caggacagccttgcgacttagtgagactttgtctcacctcatctttcctccgaccaaaga 381

                                                                       
Query: 61  gtgatattctatttctctccctctactcagttccccaacaccccagaatatgtcctgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgatattctatttctctccctctactcagttccccaacaccccagaatatgtcctgccc 321

                                                                       
Query: 121 tcttgacctcttcttaactactccccatatagtcatgtgtggtccagtgtagaagagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcttgacctcttcttaactactccccatatagtcatgtgtggtccagtgtagaagagagt 261

                                                                       
Query: 181 tcaagttgtacccctcagtcatatgtgagccttagacagctttaaagcccaacgttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcaagttgtacccctcagtcatatgtgagccttagacagctttaaagcccaacgttctat 201

                                                      
Query: 241 ccttccttccttcctccctccctccctccctccctccctccct 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccttccttccttcctccctccctccctccctccctccctccct 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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