BAC Information

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BAC

Clone NameMSMg01-537D05
Chromosome10 (Build37)
Map Location 76,906,592 - 77,109,501
singlet/doubletdoublet
Overlap gene1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2
Upstream gene2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1
Downstream geneLOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537D05.T7 (MSMg01no537_d05.b1)MSMg01-537D05.TJ (MSMg01no537_d05.g1)
ACCAG604228AG604229
length734766
length of high quality
(start - end)		231 (53 - 283)678 (77 - 754)
definitionCHROMAT_FILE: MSMg01no537_d05.b1 PHD_FILE: MSMg01no537_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:31 2005CHROMAT_FILE: MSMg01no537_d05.g1 PHD_FILE: MSMg01no537_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,109,275 - 77,109,501)(76,906,592 - 76,907,269)
sequence
TAATTAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGGCAGTTGTGGGGGTGTAGGGGTAAGGGACTAGGG
ACACCCCAACCACCTAGGTGAGGAATGGCAGTGGCAGCTGGGACTGAACC
TGGGCTCCACCAGAGGTTGAGAGCTACCCCAGTTAGAAAGGGTACAAGCC
TCTACCCACAACAGCACTGTCCAGGAACCACAACAGCAGGGTCTCCTGGA
GAACCAGGGTTCATCAAATACCTTGATTTTTAAGGCAGGTTCAACAGTGC
CTGCAGCTTTTGAAGCAGTGCTTCAAGAATAAGCTCTGATGCTGTGGGGT
GGAACATGCCTTTTGGCACCATATTTCAGGAGGCAGAAGCCGGCCAAATC
TTGTTCAATCCCGCCTGGGCTTACCCATGGGGTCCCCAGGCCAGTTCCGG
GGTTAAAAGGAAAACCCGGGGGGGAAGGATTATGGGAGGAAAAAAGCCTT
TTGGGATCCCTAAAAAAAAAAGCATCCCCCAAAAAGCCTGTGGGGGGTAA
CCCCCTTTGGGAACCACCCGGGTCCCAAAAATTACAAAAAACTCTTCCCC
CAAAATTTTAATAAAGGTGTTTGTAATAAAAACACCCAAAAGGCCCCCTT
ATATCTCCAGGGGATAATATTCTTTTAATAATTTTTTCCCATTCGCCTCC
ACAAGATAAGAACAACCCCTATAACTTGGGGTAG

NNCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGGCTAAGGACTTCTTGCAAA
TAGATACAACCTGTAGGGATGGGAATCTATTTCAGGTGTTTCCTTTCTTC
AACTAGTGAATACCCATAGTGAAGAATTCCTATAATCTTGGGATCCTGAA
GCAGGAGGGTCTCATGTTCCTGGCCAGCCTGGGATATGCAGTAAGACCCT
CTCTTAAAAGACAAACAACAGCAAAGAATAAGATAAGGAGTGCTAGAAGA
CCACAGCTGGATTTGAGAAAGCCAGGCCTTAGATTTGGTGTAACTCCTAG
CCAAATCCTCAGGCTTAGGGCCTGAAAAACATTGAAACGTATTTGCAGTA
TAATCTAACATTCACCATACAATCTCACATTGGCCTAAGAAATGTAATCT
CCAGTGAGGACGAAAACAACTCCAAAATTCTGTTTTGTTATGCTCCTCTG
AGAATGGAATTAAGCAATCACAAAATGGAAGTGGCTTTTAGCTACAGCTT
CTGGCTACCAGTCTTAACCGCTGTAACTTTTGGATATATAATTTTTTAAA
ACCATCCTAAAAGGGACATCAGTGCACTGGAAATATTTCCCACCCCCATG
ATATTTTATGTACCAAACATTTATTTTAAAAATAACCTTCCATAGCATCT
ATTTGAGGTTAAGTTTTCAATGATTAGTGTTCATTAATCTGTATCATATT
ATGTTTGATCTTTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_d05.b1 MSMg01no537_d05.b1 CHROMAT_FILE:
MSMg01no537_d05.b1 PHD_FILE: MSMg01no537_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:31 2005
         (231 letters)



>mm_chr10_77109071_77109701
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 226/227 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactggcagttgtgggggtgtaggggtaagggactagggacaccccaaccaccta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaattcactggcagttgtgggggtgtaggggtaagggactagggacaccccaaccaccta 372

                                                                       
Query: 65  ggtgaggaatggcagtggcagctgggactgaacctgggctccaccagaggttgagagcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggtgaggaatggcagtggcagctgggactgaacctgggctccaccagaggttgagagcta 312

                                                                       
Query: 125 ccccagttagaaagggtacaagcctctacccacaacagcactgtccaggaaccacaacag 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccccagctagaaagggtacaagcctctacccacaacagcactgtccaggaaccacaacag 252

                                                          
Query: 185 cagggtctcctggagaaccagggttcatcaaataccttgatttttaa 231
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cagggtctcctggagaaccagggttcatcaaataccttgatttttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no537_d05.g1 MSMg01no537_d05.g1 CHROMAT_FILE:
MSMg01no537_d05.g1 PHD_FILE: MSMg01no537_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:31 2005
         (678 letters)



>mm_chr10_76906392_76907469
          Length = 1078

 Score = 1288 bits (666), Expect = 0.0
 Identities = 675/678 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctggctaaggacttcttgcaaatagatacaacctgtagggatgggaatctatttcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctggctaaggacttcttgcaaatagatacaacctgtagggatgggaatctatttcagg 260

                                                                       
Query: 61  tgtttcctttcttcaactagtgaatacccatagtgaagaattcctataatcttgggatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttcctttcttcaactagtgaatacccatagtgaagaattcctataatcttgggatcc 320

                                                                       
Query: 121 tgaagcaggagggtctcatgttcctggccagcctgggatatgcagtaagaccctctctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagcaggagggtctcatgttcctggccagcctgggatatgcagtaagaccctctctta 380

                                                                       
Query: 181 aaagacaaacaacagcaaagaataagataaggagtgctagaagaccacagctggatttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagacaaacaacagcaaagaataagataaggagtgctagaagaccacagctggatttga 440

                                                                       
Query: 241 gaaagccaggccttagatttggtgtaactcctagccaaatcctcaggcttagggcctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagccaggccttagatttggtgtaactcctagccaaatcctcaggcttagggcctgaa 500

                                                                       
Query: 301 aaacattgaaacgtatttgcagtataatctaacattcaccatacaatctcacattggcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacattgaaacgtatttgcagtataatctaacattcaccatacaatctcacattggcct 560

                                                                       
Query: 361 aagaaatgtaatctccagtgaggacgaaaacaactccaaaattctgttttgttatgctcc 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 aagaaatgtaatctccagtgaggacgaaaacaactcccaaattctgttttgttatgctcc 620

                                                                       
Query: 421 tctgagaatggaattaagcaatcacaaaatggaagtggcttttagctacagcttctggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tctgagaatggaattaagcaatcacaaaatggaagtggcttttagctacggcttctggct 680

                                                                       
Query: 481 accagtcttaaccgctgtaacttttggatatataattttttaaaaccatcctaaaaggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accagtcttaaccgctgtaacttttggatatataattttttaaaaccatcctaaaaggga 740

                                                                       
Query: 541 catcagtgcactggaaatatttcccacccccatgatattttatgtaccaaacatttattt 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 catcagtgcactggaaatatttcccacccccatgatattttatgtaccaaacatctattt 800

                                                                       
Query: 601 taaaaataaccttccatagcatctatttgaggttaagttttcaatgattagtgttcatta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taaaaataaccttccatagcatctatttgaggttaagttttcaatgattagtgttcatta 860

                             
Query: 661 atctgtatcatattatgt 678
           ||||||||||||||||||
Sbjct: 861 atctgtatcatattatgt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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