BAC Information

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BAC

Clone NameMSMg01-537E05
Chromosome10 (Build37)
Map Location 114,906,961 - 114,907,605
singlet/doubletsinglet
Overlap geneLgr5
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131
Downstream geneA930009A15Rik, LOC668071, EG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537E05.T7 (MSMg01no537_e05.b1)MSMg01-537E05.TJ (MSMg01no537_e05.g1)
ACCAG604276AG604277
length752740
length of high quality
(start - end)
643 (51 - 693)606 (81 - 686)
definitionCHROMAT_FILE: MSMg01no537_e05.b1 PHD_FILE: MSMg01no537_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:35 2005CHROMAT_FILE: MSMg01no537_e05.g1 PHD_FILE: MSMg01no537_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGAATGTCTCAGTGATCTAGCCATGGATGTTTGTTTTTT
AAAGATCTATTTATTATTTTATGTATATGAGTACACTGTAGCTGTACAGA
TGGTTGTGAGCCTTCATGTGGTTGTTGAGAATTGAAGTTTAGGGCCGAAG
TTTTGCTCTGGCACAAAGACTTATTCAATATTATAAATAGGTACATCGTA
GCTGTCTTCAGACATACCAGAAGAGGGCGTCAAGATCTCATTATGGGTGG
TTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAG
AGCAGTCAGTGCTCTTACCCACTGAGCCATCTCGCCAGCCCACATTGGAT
GTTCTAAAATCAGTTTTATTCATTGGAAAAATATAGGTAAGCAAAAGCCC
TTGTAAGATTAGCCTGGTGATAGCATCTGTAAGGGGCACCACAGATCCTA
AAAGAGCAATCTTCAGTACCATTTCAGTGTGTAGTTGAAACCTGATGAAA
TATATCAATGTTGGCACTTCTGTATAGATTTCTGCATAGATTGTGACAAA
ATGCAGGCGAACACATAACATTAATTGCACTCTATTTAAAGGCACAACAT
ATTTAAAACTGTTCTATGTCAGGAAGGACACGTAAACGGAGCGCAAAGGC
CACTTACTTTGTGATAAGAGACGGGTTGCCTACGAACGCTCGCTCCGGTA
TG
GGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTC
ATGGGCATCTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTATAATTTTGTT
GAAGATATTTGCTGGCCCTTTGAGTTGAAAATCTTCATTCTCATCTACTC
CTATTATCCTTAGGTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGATA
TTTTGAGTTAGGATATTTTTGCATTTTGTATTTTCTTTGATTCTTGTGCC
AATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTCCCATCTCTT
GTATTCTGTTGCTGATGCTGGCATCTATGGTTCCATATTTCTTTCCTATG
GTTTCTATCTCCAGCATTGCCTCACTTTGGGTTTTCTTTATTGTGTCTAC
TTCCCTTTTTAGGTCTTGGGTGGTTTTATTCAATTCCATCACCTGTTTGA
TCATGTTTTCCTGTAATTCTTTAAGGGATTTTTGTGTTTCCTCTTTAAGA
CCTTCTACCTGTTTAGCAGTGTTCTCCTGTATTTTTTTGAGTGAGTTATT
AAAGTCATTCTTGATGTCCTCTACCATCATCATGAGATATGCTTTTAAAT
CCGGGTCTAGCTTTTCGGGTGTGTTGGTGTGCCCTGNACTGGGCGAAGTT
GGAGTGCTGGGTTCTGGTGATGGTGAGTGGTATTGGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_e05.b1 MSMg01no537_e05.b1 CHROMAT_FILE:
MSMg01no537_e05.b1 PHD_FILE: MSMg01no537_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:35 2005
         (643 letters)



>mm_chr10_114906759_114907805
          Length = 1047

 Score = 1093 bits (565), Expect = 0.0
 Identities = 624/647 (96%), Gaps = 10/647 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgaatgtctcagtgatctagccat-ggatgtttgttttttaaagatctattta 63
           ||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 203 gaattcttgaatgactaagtgatctagc-attggatgtttgttttttaaagatctattta 261

                                                                       
Query: 64  ttattttatgtatatgagtacactgtagctgtacagatggttgtgagccttcatgtggtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttattttatgtatatgagtacactgtagctgtacagatggttgtgagccttcatgtggtt 321

                                                                       
Query: 124 gttgagaattgaagtttagggccgaagttttgctctggcacaaagacttattcaatatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttgagaattgaagtttagggccgaagttttgctctggcacaaagacttattcaatatta 381

                                                                       
Query: 184 taaataggta--catcgtagctgtcttcagacataccagaagagggcgtcaagatctcat 241
           ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 taaataggtatacattgtagctgtcttcagacataccagaagagggcgtcaagatctcat 441

                                                                       
Query: 242 tatgggtggttgtgagccaccatgtggttgctgggatttgaactcaggaccttcagaaga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 442 tatgggtggttgtgagccaccatgtggttgctgggatttgaactcaggaccttcagagga 501

                                                                       
Query: 302 gcagtcagtgctcttacccactgagccatctcgccagcccacattggatgttctaaaatc 361
           || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 gctgtcagtgcttttacccactgagccatctcggcagcccacattggatgttctaaaatc 561

                                                                       
Query: 362 agttttattcattggaaaaatataggtaagcaaaagcccttgtaagattagcctggtgat 421
           ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 562 agttttattcattagaaaa-tatacgtaagcaaaagcccttgtaagattagcctggtgat 620

                                                                       
Query: 422 agcatctgtaagg-----ggcaccacagatcctaaaagagcaatcttcagtaccatttca 476
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcatctgtaaggtaaggggcaccacagatcctaaaagagcaatcttcagtaccatttca 680

                                                                       
Query: 477 gtgtgtagttgaaacctgatgaaatatatcaatgttggcacttctgtatagatttctgca 536
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 gtgtgtagttgaaacctgatgaaatatatcaatgttggcacttctctatagatttctgca 740

                                                                       
Query: 537 tagattgtgacaaaatgcaggcgaacacataacattaattgcactctatttaaaggcaca 596
           |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 741 tagactgtgacaaaatgcaggcgaacacataacattaattgcattatatttaaaggcaca 800

                                                          
Query: 597 acatatttaaaactgttctatgtcaggaaggacacgtaaacggagcg 643
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acatatttaaaactgttctatgtcaggaaggacacgtaaacggagcg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1047
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1037
Effective search space:   656421
Effective search space used:   656421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)