BAC Information

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BAC

Clone NameMSMg01-537F10
Chromosome10 (Build37)
Map Location 29,003,786 - 29,004,013
singlet/doubletsinglet
Overlap genenone
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
Downstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537F10.T7 (MSMg01no537_f10.b1)MSMg01-537F10.TJ (MSMg01no537_f10.g1)
ACCAG604334AG604335
length798747
length of high quality
(start - end)		250 (49 - 298)541 (81 - 621)
definitionCHROMAT_FILE: MSMg01no537_f10.b1 PHD_FILE: MSMg01no537_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:41 2005CHROMAT_FILE: MSMg01no537_f10.g1 PHD_FILE: MSMg01no537_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAACTCTTAAAGAATAATATAACAATATAAAGTTATTTGTG
CTCCTACTAATGGTGACCTAGTTGATCAGAAGAGGGCAAAAGCTCCGTAA
GAGTTACTTGAGATGAGTGACTGGGAGACTTTGACAAACACGATCTCAAT
GTACTGTTCCCAGAGCTGTCGTTCTCTTCCTCATGTTCAGGCTGGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT
ANANAAAAAAAAAAAAAAATAATTTTTTTTTTTAATTTNTATAAAAATAA
TTATATAAAAAATTTTTTAAAATTATATTTTATAAAAATAAAATATTTTT
ATAAATATTTTTTTTAAAATTATTTATTTTTAAATTTTATTTATTTTTTA
ATATTTTTTAATATTTATATTTTTTATTTTTATATTTTATATATTAATAT
TTTTTATATTTTTTTATAATTTAATATTTTTTTATTAAACAAATTTTTTT
TTTTATTATTAATTTTTAATTTAAATTTATAATAAAAATTTTATAATTTA
ATCTTTTAAATATTTTAAATTTTTTTTTATATTATTTATTTTTTTTATTC
CAATATTTTTTTTTTTATAATATTTTTATAATATATTTAAACACACTCAT
ATATTTTTATACATCTTCATAACTTTAATTTTACTATACTTATTTAATTA
CCTTATAATACATACCATATCTTTATTATTAACTTTTTTTTCTTTCCC

GGCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGTCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACTTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACATGAAACTCAAGAAGATTGAAGACTGAAGTGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_f10.b1 MSMg01no537_f10.b1 CHROMAT_FILE:
MSMg01no537_f10.b1 PHD_FILE: MSMg01no537_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:41 2005
         (250 letters)



>mm_chr10_29003582_29004231
          Length = 650

 Score =  418 bits (216), Expect = e-121
 Identities = 225/228 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaactcttaaagaataatataacaatataaagttatttgtgctcctactaatg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaactctcaaagaataatataacaatataaagttatttgtgctcctactaatg 264

                                                                       
Query: 65  gtgacctagttgatcagaagagggcaaaagctccgtaagagttacttgagatgagtgact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgacctagttgatcagaagagggcaaaagctccgtaagagttacttgagatgagtgact 324

                                                                       
Query: 125 gggagactttgacaaacacgatctcaatgtactgttcccagagctgtcgttctcttcctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggagactttgacaaacacgatctcaatgtactgttcccagagctgtcgttctcttcctc 384

                                                           
Query: 185 atgttcaggctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 232
           ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 385 atgttcaggcttgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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