BAC Information

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BAC

Clone NameMSMg01-537L22
Chromosome10 (Build37)
Map Location 104,028,020 - 104,028,696
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537L22.T7 (MSMg01no537_l22.b1)MSMg01-537L22.TJ (MSMg01no537_l22.g1)
ACCAG604643AG604644
length751758
length of high quality
(start - end)		667 (50 - 716)666 (80 - 745)
definitionCHROMAT_FILE: MSMg01no537_l22.b1 PHD_FILE: MSMg01no537_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:11 2005CHROMAT_FILE: MSMg01no537_l22.g1 PHD_FILE: MSMg01no537_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGTACAGATTACAGTAAAGATACTACCAAAGTCCAACTTG
GTGATCCCTGACTTACATTATGTTATATTAGGGTTGCTTATAGAAGTATG
GGTATGGTTTTATTTACAAAAGCAGAAATAACTCACAGCCAGCTGCATCA
CCAAGGCCCACCCCATAATGAATGACAGCTCACAAAAGCTAGGAAACCTG
GCATATATTGCCCAACCTACACGTAACCCAGCAGGCTGAGTTTCCTTCCT
AAGTACCACATCTGAATCTCTTTCATACAACTCTGCTCGTTTTTGCATCT
CACAGGCAGTTGGTCTTAGCTCAGAGACTTCAGTGCTGCTTGGCTTATTT
GAGGGTCTTCTTTGAAGCTTTTATTGCTTACTCTGACAGGGAAAAGCCTA
GTGAATTTGGTCAGTTTCAGGATCTTCCTGAAGTAATTTTGAGAGTTTTA
CTTTCCTAAACAGGAAAGAGCTTGTGTTCGTGACAGAATGTTTTAATTTT
GGAAGAAACTATTTTTTGTTGTTGTTGGTTTTCGAGACAGGATTTCACTG
TGTAGCCCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCGA
ACTCAGAAATCCACCTGCCTCTGCCTCCTGGATGCTGGGATTAAAGGCAT
GCGCCACCACTGCCCAGCTTGGAGGAAACTATTACACAGCAGTCCATCTC
C

NNNCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTGAGGATTAGAAGTAA
TAGTGTGCTCCAATTTCAGTTAATAGACTAAAAGAGTATAGTTTCATCAT
TTGTTTAATTGGGAGTTCTGGGTGAAAAAAGATACTCAGTAATGGAACTC
CCAGTAGAGTGAAAATGGAGTTGGAGCAAGTGTGTGGTGAGTCCAATGCT
CCCAACATTTATTCTCCTTGCTTCTTACTAAACAGTGACATTGATACCTT
GATTGCTTTCAACAATCTACTTCGGATTGCTATGTTATTGAAATTAGAAA
ACAGATAAATTAAGACATTTTATAGTATAAGAACAAAATCTCATCATTTA
CATTTACCACTTGTAACATGTACAGAAATTGTTTATTGAACCATGGACAT
TATTTCACTGACTCCCGGTGAACTATTTTCATTTGGGGCTGAGTGAGACA
GGCACTGGGCTGTGCCAAATCTTTGTCATTTGGAAGCATTAGATGATATA
TCTGAACTTACCCCTCACAAGAACTCATACATTTACAATAATTTCTTGAT
GGTAGATTTGCAATCAAATTGTCCTTTCCCCTATTATATTTTTTTATTAT
TTAAAACAGTTCTAAAATTTAAATATGTTGCTCCACTCCTCAAACTCCTT
CTACATCCTTCTCACTCCAAATCCTCACAGTTCCTTAAGTTTGAAATTAC
AAATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_l22.g1 MSMg01no537_l22.g1 CHROMAT_FILE:
MSMg01no537_l22.g1 PHD_FILE: MSMg01no537_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:12 2005
         (666 letters)



>mm_chr10_104027831_104028896
          Length = 1066

 Score = 1149 bits (594), Expect = 0.0
 Identities = 652/678 (96%), Gaps = 13/678 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttgaggattagaagtaatagtgtgctccaatttcagttaatagactaaaagagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cattttgaggattagaagtaatagtgtgctccaatttcagttaatagactaaaagagtat 249

                                                                       
Query: 61  agtttcatcatttgtttaattgggagttctgggtgaaaaaagatactcagtaatggaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtttcatcatttgtttaattgggagttctgggtgaaaaaagatactcagtaatggaact 309

                                                                       
Query: 121 cccagtagag-tgaaaatggagttggagcaagtgtgtggtgagtccaatgctcccaacat 179
           |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 310 cccagtagagct-aaaatggagttggagcaagtgtgtggtgagtccaatgcttccaacat 368

                                                                       
Query: 180 ttattctccttgcttcttactaaacagtgacattgataccttgattgctttcaacaatct 239
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 ttattctccttgctttttactaaacagtgacattgataccttgattgctttcaataatct 428

                                                                       
Query: 240 acttcggattgctatgttattgaaattagaaaacagataaattaagacattttatagtat 299
           |||| || |||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 acttggggttgctaggttattgaaattagaaaacagataaattaagacattttacagtat 488

                                                                       
Query: 300 aagaacaaaatctcatcatttacatttaccacttgtaacatgtacagaaattgtttattg 359
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 489 aagaacaaaatctcatcatttacatttaccatttgtaacatgtacagaaattgtttattg 548

                                                                       
Query: 360 aaccatggacattatttcactgactcccggtga-----------actattttcatttggg 408
           |||||||||||||||||||||||||||||||||           ||||||||||||||||
Sbjct: 549 aaccatggacattatttcactgactcccggtgagaatttcatggactattttcatttggg 608

                                                                       
Query: 409 gctgagtgagacaggcactgggctgtgccaaatctttgtcatttggaagcattagatgat 468
           |||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 609 gctgagtgagacaggcactgggttgtgccaaatctttgtcatttgcaagcattatatgat 668

                                                                       
Query: 469 atatctgaacttacccctcacaagaactcatacatttacaataatttcttgatggtagat 528
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 669 atatctgaacttacccctcacaataactcatacatttacaataatttcttgatggtaaat 728

                                                                       
Query: 529 ttgcaatcaaattgtcctttcccctattatatttttttattatttaaaacagttctaaaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttgcaatcaaattgtcctttcccctattatatttttttattatttaaaacagttctaaaa 788

                                                                       
Query: 589 tttaaatatgttgctccactcctcaaactccttctacatccttctcactccaaatcctca 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tttaaatatgttgctccactcctcaaactccttctacatccttctcactccaaatcctca 848

                             
Query: 649 cagttccttaagtttgaa 666
           ||||||||||||||||||
Sbjct: 849 cagttccttaagtttgaa 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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