BAC Information

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BAC

Clone NameMSMg01-538A15
Chromosome10 (Build37)
Map Location 105,013,809 - 105,014,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538A15.T7 (MSMg01no538_a15.b1)MSMg01-538A15.TJ (MSMg01no538_a15.g1)
ACCAG604864AG604865
length742756
length of high quality
(start - end)
664 (36 - 699)395 (66 - 460)
definitionCHROMAT_FILE: MSMg01no538_a15.b1 PHD_FILE: MSMg01no538_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:35 2005CHROMAT_FILE: MSMg01no538_a15.g1 PHD_FILE: MSMg01no538_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GTAGATTAAGCTGAGCTCAAACTCAGAGATCCATCTGACTCTCCCTCTAG
AGTGCTGCTATTAAAGGCCTGTACCACTACTACCTGGTGATAGGCACACA
TCAGTTTATTAACTAATCCCTTGAATTTCCATTCAATCTTCATAAAGCTT
GTCCCCTCATCCACAAAGTGCCCAGAGCCCATAGCATCTGAACATTGTAA
AAGAAACTTCTAAAAAAGGGTAAACAAGTAAACAATAAGAGTATTTAAGT
GTGATTATAGAAGAGCTGAAAGCCCACAAATATTCATCAGGAAGGAGAAA
CTAAATTGTTGTCTATGTTAAAGATGCCAAAGCCGGAGGGAAGAAGGGTG
ACGTTTCTTGAGTGCATCACTTCCTCGGGAAGATCCATGATAGGAAATCG
CACAAGGACAGCTTCTTTCCTAAGACTTATGGGCATACAACTACTAGAAA
GCTTTGGGTTCAGAGAGCTAAAATCTTGTGAGCATTTCTCCATTCCAAAG
GTCTGATAGTTTTAAAAACATTAAGTGTGGCTTCTTCTACAACCATCCAG
CCCCTCTGAATTGAAAGCCTCAGAAACTGAGACATGCCATAAAATGGTAT
ATCTTGAGATTCTTAATAGACAGCAGACTGCACATCCTGCCATGCTTGAA
AAAATCCAGTTTCTTGTAAAAAAACGCTATTATACTTTAACG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGGGCCAGGGGGCACGAATGTATAGGTTGGGGAT
CAGGGTGGGGGGAAGGTATAGGGGACTTTTGGAGAGGAATCTGGGAAAGG
GGATAGCATTTGCAATGTAAATGAAGAAAATATCTAATTTAAAAAAAAAA
GACTTACAAGTTAAGACTTTAGTTGTTGTGCCCAGCAATTGAGCTACTGT
TGTTTCTGAAGTAAGTTAGTGTTGCATTTTCCTTCACATGACAACTCATC
TGGGCTCAGGAGAGTAAGGTACAAGAAAGACAAAGCATGGCTTTGCCTGA
GGTACAACACAAAGGTCATGGGGGGTTTGAAGCATGGGGCTGACATGGTA
ACAACCTGCCAGTGAGAACCTAGAGAGCTGGGTGGAGAGACTTTGGAGCT
CTGAATCATAGAGTTGTCACAGATAAAAACAGGTCAGCCATTGCCCACCA
GTGCATGGCCAGCCAGGCTGCCAGGGCAGATAGTTGCTTGTACAAGCATA
GAAACGAGATGGCCTTTTAAAAATATATTTCCTGCAACAGTGCACACCTG
TGGATACACCCTTTGATCTTACCCATGATGAATGGTTTTTCTTGATCACC
AATTTGTTCCAAGCCCGATTTATCTTTTTAAGTGTAATTGGAATCTCTTA
ATGAGAAGAGCTTTTCTTACTATTCTATGATGGAGATTGCTATTTGATTC
TTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_a15.b1 MSMg01no538_a15.b1 CHROMAT_FILE:
MSMg01no538_a15.b1 PHD_FILE: MSMg01no538_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:35 2005
         (664 letters)



>mm_chr10_105013605_105014668
          Length = 1064

 Score = 1222 bits (632), Expect = 0.0
 Identities = 653/660 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctgtagattaagctgagctcaaactcagagatccatctgactctccctcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctgtagattaagctgagctcaaactcagagatccatctgactctccctcta 264

                                                                       
Query: 65  gagtgctgctattaaaggcctgtaccactactacctggtgataggcacacatcagtttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagtgctgctattaaaggcctgtaccactactacctggtgataggcacacatcagtttat 324

                                                                       
Query: 125 taactaatcccttgaatttccattcaatcttcataaagcttgtcccctcatccacaaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taactaatcccttgaatttccattcaatcttcataaagcttgtcccctcatccacaaagt 384

                                                                       
Query: 185 gcccagagcccatagcatctgaacattgtaaaagaaacttctaaaaaagggtaaacaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcccagagcccatagcatctgaacattgtaaaagaaacttctaaaaaagggtaaacaagt 444

                                                                       
Query: 245 aaacaataagagtatttaagtgtgattatagaagagctgaaagcccacaaatattcatca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacaataagagtatttaagtgtgattatagaagagctgaaagcccacaaatattcatca 504

                                                                       
Query: 305 ggaaggagaaactaaattgttgtctatgttaaagatgccaaagccggagggaagaagggt 364
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ggaagaagaaactaaattgttgtctatgttaaagatgccaaagccagagggaagaagggt 564

                                                                       
Query: 365 gacgtttcttgagtgcatcacttcctcgggaagatccatgataggaaatcgcacaaggac 424
           ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 gacatttcttgagtgcatcacttcctcgggaagatccatgataggaaatcacacaaggac 624

                                                                       
Query: 425 agcttctttcctaagacttatgggcatacaactactagaaagctttgggttcagagagct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcttctttcctaagacttatgggcatacaactactagaaagctttgggttcagagagct 684

                                                                       
Query: 485 aaaatcttgtgagcatttctccattccaaaggtctgatagttttaaaaacattaagtgtg 544
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatcttgtgagcatttctccatttcaaaggtctgatagttttaaaaacattaagtgtg 744

                                                                       
Query: 545 gcttcttctacaaccatccagcccctctgaattgaaagcctcagaaactgagacatgcca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcttcttctacaaccatccagcccctctgaattgaaagcctcagaaactgagacatgcca 804

                                                                       
Query: 605 taaaatggtatatcttgagattcttaatagacagcagactgcacatcctgccatgcttga 664
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 805 taaaatggtacatcttgagattcttaatagacagcagactgcacatcctgccacgcttga 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)