BAC Information

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BAC

Clone NameMSMg01-538H17
Chromosome10 (Build37)
Map Location 90,841,871 - 90,957,035
singlet/doubletdoublet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538H17.T7 (MSMg01no538_h17.b1)MSMg01-538H17.TJ (MSMg01no538_h17.g1)
ACCAG605199AG605200
length752750
length of high quality
(start - end)
683 (36 - 718)507 (65 - 571)
definitionCHROMAT_FILE: MSMg01no538_h17.b1 PHD_FILE: MSMg01no538_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:09 2005CHROMAT_FILE: MSMg01no538_h17.g1 PHD_FILE: MSMg01no538_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,841,871 - 90,842,548)(90,956,592 - 90,957,035)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTG
ACTCACAGTTTGGTTCTGAAGATAACCCAGTTTCCTGAATAACTGAGGAA
TGGGAGATGAAGAGGCACCATTCAGAGAGCTATCCCTGTGAACCCAGAAA
CGTAAATAAAGGCCAGAGAAGTAGGAAAAGTTCTTTATCTAAAGCTTCAA
GTAAAAAAAAAAATTAACCACTTAAAAATATAATTATACTTCCCAGGTTT
CTAGCATGCAGGCCGTGCTGGGATTTGTCCTTGTAGAACCATCTTGGCTT
CCAGACTATCATTATATTTCAATTTAACTTTCCCAACAAAATCCGTTATC
GGTTCCAGTGACCTGTTCATTTTCTGCATGTGCAGAATTCAATGAAGCTG
TTTTAAATATTTTCTTCTTTATTAAACACTCCTCTAAAATCCATAATTCA
GGAGACAATAAATAGTTGCATTTATTTCTCTACAGCTCAGCTCTGCGAAG
CCGACTGTGAAGTCAGTGGGGTATTCTCACGCTAGCCAGTTTTTGTTATC
AGCTACACAACATGAAAGAAGATTATATTTTGCTGTTAATGGGAGAAACG
GAGGGAGAATAAAGACCCTAAGTATTTTAAAACACTAGTTTGAATTGCGG
CTTGAGATCCAAATGGGAAGGATGGGGCAAGTTCTGCGTGGATCTGTCAC
TTAACTTATTGAGGACAAAAGGATTCTGTTTCCTTTTTATATTAAATGAA
AT
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTAGAAGCTTCAGGGTCAGCTAGCCTCATGTATGC
AGTGAGGAACAAGAAGAAACCCTTTTTTCAAACAAGCGGTAAGGATAAGG
ACTGACGCCTAGGGTTGTCTTCTGTCCTCGACACATATGCTATGATATGT
ACACACCTGACATCCGTGTTTACACGTGCATCTATAATACACACATACAC
AGAGGGAGGGGACATGTGATTTTTGTTGGAAAGATGGGGTTTGGGACCTC
CATTCCAGAAAAGCCTGTTGGTTTTGGAGTCAGTCAAAAATCCCACTCAG
TCACTTCTTATCTAAGAGAACTGGAGCTTCATTTAGCTCTGACATTAAAA
ATGATGGTAATGGCGCCTACCATTATTCCAGAAGGAATGATGGTAAGGAC
AAGAAATGATGCATGATACATAGCACCATGCCTGGCACAAATTCAGTGAT
TAATAAATGATTACTGTGTAATGGTTGTTGTGGTTGTCATCATCGTCGTC
ATCATCATCATTAGTTTAGGTCATGAGGAGTGAGATTCTGAATTCTGGGT
AATGGGTTCCACGAATTGCCAACATGTCACTGGGGAGTTCTGTTGGCCTA
TACTCTTCTGGCCCTGATTCAAGTAATGAGGTTTGCAATTTCATTGACTG
GGTGTGCTAATTAGAAGCTTCTTAAAGATTTCTCTTGTCCATTGAGGCCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_h17.b1 MSMg01no538_h17.b1 CHROMAT_FILE:
MSMg01no538_h17.b1 PHD_FILE: MSMg01no538_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:09 2005
         (683 letters)



>mm_chr10_90841667_90842748
          Length = 1082

 Score = 1290 bits (667), Expect = 0.0
 Identities = 676/679 (99%), Gaps = 1/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagtgactcacagtttggttctgaagataacccagtttcctgaataactgagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgactcacagtttggttctgaagataacccagtttcctgaataactgagga 264

                                                                       
Query: 65  atgggagatgaagaggcaccattcagagagctatccctgtgaacccagaaacgtaaataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgggagatgaagaggcaccattcagagagctatccctgtgaacccagaaacgtaaataa 324

                                                                       
Query: 125 aggccagagaagtaggaaaagttctttatctaaagcttcaagtaaaaaaaaaaattaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 aggccagagaagtaggaaaagttctttatctaaagcttcaagtaaaaaaaaaa-ttaacc 383

                                                                       
Query: 185 acttaaaaatataattatacttcccaggtttctagcatgcaggccgtgctgggatttgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acttaaaaatataattatacttcccaggtttctagcatgcaggccgtgctgggatttgtc 443

                                                                       
Query: 245 cttgtagaaccatcttggcttccagactatcattatatttcaatttaactttcccaacaa 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 cttgtagaaccatcttggcttccagactatcattttatttcaatttaactttcccaacaa 503

                                                                       
Query: 305 aatccgttatcggttccagtgacctgttcattttctgcatgtgcagaattcaatgaagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatccgttatcggttccagtgacctgttcattttctgcatgtgcagaattcaatgaagct 563

                                                                       
Query: 365 gttttaaatattttcttctttattaaacactcctctaaaatccataattcaggagacaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttttaaatattttcttctttattaaacactcctctaaaatccataattcaggagacaat 623

                                                                       
Query: 425 aaatagttgcatttatttctctacagctcagctctgcgaagccgactgtgaagtcagtgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatagttgcatttatttctctacagctcagctctgcgaagccgactgtgaagtcagtgg 683

                                                                       
Query: 485 ggtattctcacgctagccagtttttgttatcagctacacaacatgaaagaagattatatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtattctcacgctagccagtttttgttatcagctacacaacatgaaagaagattatatt 743

                                                                       
Query: 545 ttgctgttaatgggagaaacggagggagaataaagaccctaagtattttaaaacactagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 ttgctgttaatgggagaaacggagggagaataaagaccctaagtattttaaaacactggt 803

                                                                       
Query: 605 ttgaattgcggcttgagatccaaatgggaaggatggggcaagttctgcgtggatctgtca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgaattgcggcttgagatccaaatgggaaggatggggcaagttctgcgtggatctgtca 863

                              
Query: 665 cttaacttattgaggacaa 683
           |||||||||||||||||||
Sbjct: 864 cttaacttattgaggacaa 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1082
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1072
Effective search space:   721456
Effective search space used:   721456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no538_h17.g1 MSMg01no538_h17.g1 CHROMAT_FILE:
MSMg01no538_h17.g1 PHD_FILE: MSMg01no538_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:09 2005
         (507 letters)



>mm_chr10_90956592_90957498
          Length = 907

 Score =  843 bits (436), Expect = 0.0
 Identities = 442/444 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagaagcttcagggtcagctagcctcatgtatgcagtgaggaacaagaagaaaccctt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 tctagaagcttcagggtcagctagcctcatgtatgcagtgaagaacaagaagaaaccctt 385

                                                                       
Query: 61  ttttcaaacaagcggtaaggataaggactgacgcctagggttgtcttctgtcctcgacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttcaaacaagcggtaaggataaggactgacgcctagggttgtcttctgtcctcgacac 325

                                                                       
Query: 121 atatgctatgatatgtacacacctgacatccgtgtttacacgtgcatctataatacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atatgctatgatatgtacacacctgacatccgtgtttacacgtgcatctataatacacac 265

                                                                       
Query: 181 atacacagagggaggggacatgtgatttttgttggaaagatggggtttgggacctccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atacacagagggaggggacatgtgatttttgttggaaagatggggtttgggacctccatt 205

                                                                       
Query: 241 ccagaaaagcctgttggttttggagtcagtcaaaaatcccactcagtcacttcttatcta 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ccagaaaagcctgttggttttggagtcagacaaaaatcccactcagtcacttcttatcta 145

                                                                       
Query: 301 agagaactggagcttcatttagctctgacattaaaaatgatggtaatggcgcctaccatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 agagaactggagcttcatttagctctgacattaaaaatgatggtaatggcgcctaccatt 85

                                                                       
Query: 361 attccagaaggaatgatggtaaggacaagaaatgatgcatgatacatagcaccatgcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  attccagaaggaatgatggtaaggacaagaaatgatgcatgatacatagcaccatgcctg 25

                                   
Query: 421 gcacaaattcagtgattaataaat 444
           ||||||||||||||||||||||||
Sbjct: 24  gcacaaattcagtgattaataaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)