Query= MSMg01no538_j09.b1 MSMg01no538_j09.b1 CHROMAT_FILE:
MSMg01no538_j09.b1 PHD_FILE: MSMg01no538_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:16 2005
(674 letters)
>mm_chr10_27610202_27611277
Length = 1076
Score = 1239 bits (641), Expect = 0.0
Identities = 664/675 (98%), Gaps = 8/675 (1%)
Strand = Plus / Minus
Query: 5 gaattcatttcttatcctcatacactgccaggaatacattccctcccattattaatcagt 64
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 gaattcatttcctatcctcatacactgctaggaatacattccctcccattattaatcagt 616
Query: 65 gaaataagatcactggtgactaagctttccatttccacagatatgaggtaagttgtcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaaataagatcactggtgactaagctttccatttccacagatatgaggtaagttgtcatt 556
Query: 125 ttttaattcagggtcttgtccctgtctatcttttcctcctgagtgctaagatttcaggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttttaattcagggtcttgtccctgtctatcttttcctcctgagtgctaagatttcaggct 496
Query: 185 ggtgccacaacatctggctacaagtgaaactttgacaattcagtagttgaactttgcaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggtgccacaacatctggctacaagtgaaactttgacaattcagtagttgaactttgcaaa 436
Query: 245 aagttaagccctgaagttttgttccctcaagacaacagagactttgcaaagactttgtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagttaagccctgaagttttgttccctcaagacaacagagactttgcaaagactttgtct 376
Query: 305 aaaatgagacagggaggtattgtgtggaatgttttatttaagatggtgaacctctgaacc 364
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaagtgagacagggaggtattgtgtggaatgttttatttaagatggtgaacctctgaacc 316
Query: 365 acttctattattaacacaatttaaccttatacatctaacttcatctggctactggctact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acttctattattaacacaatttaaccttatacatctaacttcatctggctactggctact 256
Query: 425 caga----tttcttc-ttttttttctttcttgcacacccccccctctttctttttatctt 479
|||| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 255 cagatttctttcttctttttttttctttcttgca---ccccccctctttctttttatctt 199
Query: 480 tctttttttctttgttttgtttttagagacagggtttctctgtgtagcccttataaatca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tctttttttctttgttttgtttttagagacagggtttctctgtgtagcccttataaatca 139
Query: 540 gactggtcttgaactccagagatccaccagactctgcctcctgagtgttgggattaaagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gactggtcttgaactccagagatccaccagactctgcctcctgagtgttgggattaaagg 79
Query: 600 tgtgaacaatcatgccaacaccagtcagattgttatgacttactaaagtggaagctagaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgtgaacaatcatgccaacaccagtcagattgttatgacttactaaagtggaagctagaa 19
Query: 660 tgctgttgcccagta 674
|||||||||||||||
Sbjct: 18 tgctgttgcccagta 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1076
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1066
Effective search space: 707824
Effective search space used: 707824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_j09.g1 MSMg01no538_j09.g1 CHROMAT_FILE:
MSMg01no538_j09.g1 PHD_FILE: MSMg01no538_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:16 2005
(631 letters)
>mm_chr10_27459349_27460378
Length = 1030
Score = 1151 bits (595), Expect = 0.0
Identities = 622/631 (98%), Gaps = 1/631 (0%)
Strand = Plus / Plus
Query: 1 acagtcagacaggaggtagacttctcatttacaacagcatatttcaataattatgtctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtcagacaggaggtagacttctcatttacaacagcatatttcaataattatgtctaa 260
Query: 61 gcacagatggaaaagacaagaaaactatcaacaaaaatttatacttaaagtgttattcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagatggaaaagacaagaaaactatcaacaaaaatttatacttaaagtgttattcag 320
Query: 121 cagtaaatgcaaaaataaaaaggtattttcagactaatatctgagattatctatctacaa 180
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 cagtaaatgcaaaaa-aaaaaggtattttcaaactaatatctgagattatctatctacaa 379
Query: 181 gccattcccttaaaacattttatattacattttaagagtgtgtgtgtgtgtgtgtctgtg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 380 gccattcccttaaaacattttatattacattttaagtgtgtgtgtgtgtgtgtgtgtgtg 439
Query: 241 tgtgtgtgtgtatgggattttgtttcttttcatcatgtgagatctggtgattgaactacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtgtgtgtgtatgggattttgtttcttttcatcatgtgagatctggtgattgaactacc 499
Query: 301 tctcattgtcagatttggtagcaaaagccttcaccagaccaaaagtagaggaggaggagt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 500 tctcattgtcagatttggtagcaagagccttcaccagaccaaaagtagaggaggaggagt 559
Query: 361 ggggaccagtatgtgagttcccacagagtcttgaggaggttgctggccaggctccagaga 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 ggggaccagtatgtgagttcccacagagtcatgaggaggttgctggccaggctccagaga 619
Query: 421 gtcggtgtttctctttgcatttttccctactcaagtggaccatccacacactgcatgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtcggtgtttctctttgcatttttccctactcaagtggaccatccacacactgcatgatg 679
Query: 481 cccacccacactgatgggtgatcttccttattcactccattgatgcaagagctggtttgg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 680 cccacccacactgatgggtgatcttccttattcactccattgatgcaagagccggtttgg 739
Query: 541 gaaaccataccctcagacatcccctgaaagaatgttgcagctcccatctggagttatcta 600
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaaaccacatcctcagacatcccctgaaagaatgttgcagctcccatctggagttatcta 799
Query: 601 gtctggttaacccgtaaaattgatcaagaaa 631
|||||||||||||||||||||||||||||||
Sbjct: 800 gtctggttaacccgtaaaattgatcaagaaa 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
