BAC Information

Click to search

BAC

Clone NameMSMg01-538O24
Chromosome10 (Build37)
Map Location 70,979,266 - 70,979,648
singlet/doubletsinglet
Overlap genenone
Upstream gene1200015N20Rik, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860
Downstream geneLOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-538O24.T7 (MSMg01no538_o24.b1)MSMg01-538O24.TJ (MSMg01no538_o24.g1)
ACCAG605548AG605549
length753753
length of high quality
(start - end)		625 (26 - 650)391 (64 - 454)
definitionCHROMAT_FILE: MSMg01no538_o24.b1 PHD_FILE: MSMg01no538_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:42 2005CHROMAT_FILE: MSMg01no538_o24.g1 PHD_FILE: MSMg01no538_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCGCTAATTCGACTCCTATTTCGAGAGGATCCGCGGAATTCTCACCTG
AGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACC
AGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAG
ATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAGAATGAAGACT
GAAGTGTGGACACTATGCCCCTCCCTTAGAGTTGGAACAAAACACCCTTG
GAG

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCGGGATGGCGTCAGACATCGGCTCATGTCCGCAGA
GACTCTAGCAGAAGGGCAGGGCAGTATTCTGTGTTAGCGGATTACACACA
CTCATAGATACATAGATACTGCCACACCTGATAGAGATGCAGAATGGGGA
GATGATCAGTCCTTGAAGTTTCCACCCTGTGTGTTTTCATCCTCTGTACG
GAACTGTCTTCTTCCTCGTCCGTGTAGCTGATTTTGACGACTCATAGTAG
GAGCGGAATGGATCTGCATAATGACAGAATTAAGATTCCAAATCATTTAC
CCGTGGAGCTCAGGGGATCACTCACTTGGTAGAGTGATTGCCTTGCAAGC
AGGAGAATCTGAGTTTGCTACATAGACCCCATGTGAAAAATTCAGGTGTG
GTGTTNCAGTAATTCCCGGCCCCTAAGGAAAATGGAAAACACGGGAAAAC
ATCTTGGGGACTCCCTCGTGGAAAACCCCCCCCTGGCCTATTTTTGTGGA
GAAAAACCGGGCCCCCAGAAAAATATTTTTTTGTATAAAAAAAAAAGAGG
GGGGGCCCCCCTCAGAGAACACCCCCTTTTTTTATGTTCCCGGGGGGGGC
TTTCCAGTTGGGAGAAAAATATTATTTTTCCCCCCCCTCCGGGCGGGCAT
AATATTATTTTTTGTGANNNGGGGTTTTGTGTGTGGCAAGGCAGAAAACA
CCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no538_o24.g1 MSMg01no538_o24.g1 CHROMAT_FILE:
MSMg01no538_o24.g1 PHD_FILE: MSMg01no538_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:43 2005
         (391 letters)



>mm_chr10_70979058_70979848
          Length = 791

 Score =  652 bits (337), Expect = 0.0
 Identities = 374/391 (95%), Gaps = 8/391 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccgggatggcgtcagacatcggctcatgtccgcagagactctagcagaagggcagggca 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 209 tccgggatggcgtcagacaccggctcatgtccgcagagactctaacagaagggcagggca 268

                                                                       
Query: 61  gtattctgtgttagcggattacacacactcatagatacatagatactgccacacctgata 120
           ||||||||||||||||||||||||||||||||||||||        ||||||||||||||
Sbjct: 269 gtattctgtgttagcggattacacacactcatagatac--------tgccacacctgata 320

                                                                       
Query: 121 gagatgcagaatggggagatgatcagtccttgaagtttccaccctgtgtgttttcatcct 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatgcagaacggggagatgatcagtccttgaagtttccaccctgtgtgttttcatcct 380

                                                                       
Query: 181 ctgtacggaactgtcttcttcctcgtccgtgtagctgattttgacgactcatagtaggag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtactgaactgtcttcttcctcgtccgtgtagctgattttgacgactcatagtaggag 440

                                                                       
Query: 241 cggaatggatctgcataatgacagaattaagattccaaatcatttacccgtggagctcag 300
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 441 cggaatggatctgcataatgacagaattaagattccaaatcatttacctgtggagctcgg 500

                                                                       
Query: 301 gggatcactcacttggtagagtgattgccttgcaagcaggagaatctgagtttgctacat 360
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gggatcactcaattggtagagtgattgccttgcaagcaggagaatctgagtttgctacgt 560

                                          
Query: 361 agaccccatgtgaaaaattcaggtgtggtgt 391
           |||||||||||||||||||||||| ||||||
Sbjct: 561 agaccccatgtgaaaaattcaggtatggtgt 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |