Query= MSMg01no538_p09.b1 MSMg01no538_p09.b1 CHROMAT_FILE:
MSMg01no538_p09.b1 PHD_FILE: MSMg01no538_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:44 2005
(691 letters)
>mm_chr10_60557790_60558879
Length = 1090
Score = 1284 bits (664), Expect = 0.0
Identities = 682/688 (99%), Gaps = 1/688 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcaaaggtagaaaatgcccaagaaatgacaaaatgagaagattggaaaccaag 63
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaaggtagaaaattcccaagaaatgacaaaatgagaagattggaaaccaag 263
Query: 64 ttcaatatcatcttcacctgtgagccaccagacacccagaacaggagacagagcaccctt 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcaatatcatcttcacctgtgtgccaccagacacccagaacaggagacagagcaccctt 323
Query: 124 ccccactgtagtcctcattgatgacctctggtctggagcccaggcagcttgggtaagttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccccactgtagtcctcattgatgacctctggtctggagcccaggcagcttgggtaagttg 383
Query: 184 atccttctagggccaaaagaggcagaggctggctctgcattggcaatctgtccacagagc 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atccttctagg-ccaaaagaggcagaggctggctctgcattggcaatctgtccacagagc 442
Query: 244 ttaacagcaatgccacccatacctaagacagtggcatcacctgttccacttattcccagg 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 ttaacagcaatgccacccatacctaaggcagtggcatcacctgttccacttattcccagg 502
Query: 304 tatgctcggatttaacacctgagcgtgtgggacaaagacagaaaacatggtggatctggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatgctcggatttaacacctgagcgtgtgggacaaagacagaaaacatggtggatctggc 562
Query: 364 tctgctgtttgttaatggccttcctgttttaatgatggatttggatttgaaaatgccaac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tctgctgtttgttaatggccttcctgttttaatgatggatttggatttgaaaatgccaac 622
Query: 424 ccaggtgactccacatctgtatgaggcacatctatctacaaatgacaggcaaaagctttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccaggtgactccacatctgtatgaggcacatctatctacaaatgacaggcaaaagctttt 682
Query: 484 agaaatcaggttttttttcttttgtttttttcctttcagatcaacccaggtaactgaagt 543
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 agaaatcaggtttttttccttttgttgttttcctttcagatcaacccaggtaactgaagt 742
Query: 544 tctaaacagagacaagttgaaatgacaatcacacggaatcacaagtggaaggaaggcctg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctaaacagagacaagttgaaatgacaatcacacggaatcacaagtggaaggaaggcctg 802
Query: 604 aataaccatagcaagaaaaggctgtcaagctgggcctgatgacacaggcctggaagccac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aataaccatagcaagaaaaggctgtcaagctgggcctgatgacacaggcctggaagccac 862
Query: 664 ccacttgggaggccaacttaggaaaatt 691
||||||||||||||||||||||||||||
Sbjct: 863 ccacttgggaggccaacttaggaaaatt 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1090
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1080
Effective search space: 735480
Effective search space used: 735480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_p09.g1 MSMg01no538_p09.g1 CHROMAT_FILE:
MSMg01no538_p09.g1 PHD_FILE: MSMg01no538_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:44 2005
(631 letters)
>mm_chr10_60607452_60608482
Length = 1031
Score = 1168 bits (604), Expect = 0.0
Identities = 625/634 (98%), Gaps = 4/634 (0%)
Strand = Plus / Minus
Query: 1 tcagtaggtaatagccttattaacttcaaatttttattacaagagaattacgtttaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tcagtaggtaatagccttattaacttcaaatttttattacaagagaattacgtttaaaac 695
Query: 61 tgttggaaactaaataaaaagaatctaatctctccatcccccttcacctcctccttgcaa 120
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 694 tgttagaaactaaataaaaagaatctaatctcttcatcccccttcacctcctccttgcaa 635
Query: 121 caatagattaccaagagacaattgctgttggcatattgggtggttaatggagaacagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caatagattaccaagagacaattgctgttggcatattgggtggttaatggagaacagtta 575
Query: 181 gaacagttcttacaatgagaagttgttggctttcctctaatatatctggacgtgaatgca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 574 gaacagttcttacaatgagaagttgttggctttcctctaatatatctggacgtgaatgta 515
Query: 241 aatgctgagttcccatacagaagtagagtatttcttcctttaaggactttgtatttattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aatgctgagttcccatacagaagtagagtatttcttcctttaaggactttgtatttattt 455
Query: 301 ggagtagggttaataaacttttaagtctgattaggacttgcattcatttagtatatttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggagtagggttaataaacttttaagtctgattaggacttgcattcatttagtatatttgg 395
Query: 361 aatgctttttgttctgagttatttctcttgctctcatcatatccattgatgacttcctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aatgctttttgttctgagttatttctcttgctctcatcatatccattgatgacttcctgg 335
Query: 421 tactgtagaatggagattttgttcaacttattgcaataaggaattgattccttaaaaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tactgtagaatggagattttgttcaacttattgcaataaggaattgattccttaaaaaag 275
Query: 481 accaaacctaggttttcatagtacatttttattatgatctgagttcaaggttctctttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 accaaacctaggttttcatagtacatttttattatgatctgagttcaaggttctctttct 215
Query: 541 gc----ttttttttttttttttggtttttcgagacagggtttttctgtgtaaccctggct 596
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 214 gcttttttttttttttttttttggtttttcaagacagggtttttctgtgtaaccctggct 155
Query: 597 gtcctggaactcactttgtagaccaggctggcct 630
|| |||||||||||||||||||||||||||||||
Sbjct: 154 gttctggaactcactttgtagaccaggctggcct 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
