BAC Information

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BAC

Clone NameMSMg01-539H07
Chromosome10 (Build37)
Map Location 47,394,983 - 47,395,322
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252, LOC100042387
Downstream geneLOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539H07.T7 (MSMg01no539_h07.b1)MSMg01-539H07.TJ (MSMg01no539_h07.g1)
ACCAG605944AG605945
length755750
length of high quality
(start - end)		563 (53 - 615)515 (79 - 593)
definitionCHROMAT_FILE: MSMg01no539_h07.b1 PHD_FILE: MSMg01no539_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:25 2005CHROMAT_FILE: MSMg01no539_h07.g1 PHD_FILE: MSMg01no539_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGGTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAGACTCTGAAATAGCATGAACAAGGCCTGCAGGAGT
CTGTTTCAGGTCCTCTGTGAATATACTACAGGTTTCTTGTTGTGAATTTT
ATGGAATTCCTGAGTATGTGAATAAGCAGTTCCCTGATTCTTTTGCCTTC
TCTTGGTTTATTTCTTCTATTGGTTTGTCTTGTCCATCTTAGATGTGATA
GATTTTGATTTATCTTATTATGTTCTAGTTTGTTATATTTCATTATTATA
CCTTTGAAGCCTTCTCATTTTAAACTGAGAGATAGAAGCATAGTGGATGT
GGGTGGAAGGAGAGATGGGAAACATTGGGAGGGGAAGATAGAAGGAAGAC
CATAACCTATATTATGTGATAAAACAGCCTATTTTTAATTAAAAAAGTAA
AATTAAAAAATAATAATAATAAAAAGCAAAAGAATCATTCCAAGTCCCAC
ATCAGTTCGCTCACAACCATTCTGGTCTCTGTAGATACCAACATGTACAG
AGTATGCACACATACATTCAGTCACACATATAATGTAGACATACAATAAG
CCCATATTCAGACCTACAATTCTGGCAGAGGCCCCCTACTCTAACAGAAG
CTATACTGGGATCTAGAACCTCCGATAAGAGCTCCCACACACATATCTGC
AGACATCTAATGCTTTATCAGAAGAGTTCTTAAAATCTCTACCTTACCCT
ACCAN

TTGCTATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGACATTGGAAATTAGT
CCTCTGTCAAATGTGGAGTGTGTAGGCTTCAGTTTTGTCCTATTTGTGGT
GCCTTTTTCCTTACAGACACTTTTAAGTTTTATGTGATCTCATACATTAG
TTTTCTCTCTTAGTGTCTCCAATATCAGTGTTCTGTTCAGGAAGCTGTCT
TCTCTGCCATTTGTTCAAGGTTCTATCAGGTTCAGTGTATCTGAGATCAT
TAATGCACTTTAGTTTTGTGCAGGGTGATAGATGTGGATCTTTATTTTAC
ATATCAATGTTCTTGCACTGTTCTACATACCAACATTCAGTTAGACCAGT
ACTATTTGTTAAAGAAGCTGTCTTTTCTTCCATTCAATAATTTGGTCTTT
GTTCTCAAATTAGGATGACGTGGCCATTTGTGGATTTACTTCTGGGTCTT
CAGTTGGATTCCTTTGATCAACCTGTTTTTATTACTATAGATCTGTAGTG
CATCTGGAAATCAAGAATAGGAATGCATCTGGAAATTCTTTTATTGCAAA
AATAATTTTAGCTGTCCTGAATTCTGTTTTTGTCTTTTTGTTTTTCCATA
TGAAGGTGTGTGTTGTTCTTCCAATTGCTTTAAAGCATTGCGTTGGAAAT
TTGAAGGGATTGTCTTGAAACTGTAGATTGCTTTTTGGCAACATTGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_h07.b1 MSMg01no539_h07.b1 CHROMAT_FILE:
MSMg01no539_h07.b1 PHD_FILE: MSMg01no539_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:25 2005
         (563 letters)



>mm_chr10_47394360_47395322
          Length = 963

 Score =  561 bits (290), Expect = e-164
 Identities = 327/340 (96%), Gaps = 3/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 227 tttgttatatttcattattatacctttgaagccttctcattttaaactgagagatagaag 286
           ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 963 tttgttatatttcattattgtaccttttaagccttctcattttaaactgagagatagaag 904

                                                                       
Query: 287 catagtggatgtgggtggaaggagagatgggaaacattgggaggggaagatagaaggaag 346
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 903 catagtggatgtgggtggaaggagagatgggagacattgggaggggaagatagaaggaag 844

                                                                       
Query: 347 accataacctatattatgtgataaaacagcctatttttaattaaaaaagtaaaattaaaa 406
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 843 accataacctatattatgtgataaaacagcctatttttaatttaaaaagtaaaattaaaa 784

                                                                       
Query: 407 aa-taa--taataataaaaagcaaaagaatcattccaagtcccacatcagttcgctcaca 463
           || |||  |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 783 aaataaaataataataaaaagcaaaagaatcactccaagtcccacatcagttcgctcaca 724

                                                                       
Query: 464 accattctggtctctgtagataccaacatgtacagagtatgcacacatacattcagtcac 523
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 723 accattctggtctctgtagataccaacatgtacatagtgtgcacacatacattcagtcac 664

                                                   
Query: 524 acatataatgtagacatacaataagcccatattcagacct 563
           ||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 663 acacataatgtagacatataataaccccatattcagacct 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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