Query= MSMg01no539_h11.b1 MSMg01no539_h11.b1 CHROMAT_FILE:
MSMg01no539_h11.b1 PHD_FILE: MSMg01no539_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:26 2005
(654 letters)
>mm_chr10_49258840_49259893
Length = 1054
Score = 774 bits (400), Expect = 0.0
Identities = 430/440 (97%)
Strand = Plus / Minus
Query: 215 gcacctatggccaaatctaaaggaaggccaaatcccaagctccctgtttcctctcacaca 274
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1054 gcacctatggacaaatctaaaggaaggccaaatctcaagctccctgtttcctctcacaca 995
Query: 275 gtgtttatggatactgttcattttcctaaacaattgtctataaatctgtgtatgtagtat 334
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 gtgtttatggataatgttcattttcctaaacaattgtctataaatctgtgtatgtagtat 935
Query: 335 tgccaaccagaaaagctgagattctatataatctccaaatattttaattgagccttgact 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tgccaaccagaaaagctgagattctatataatctccaaatattttaattgagccttgact 875
Query: 395 ctatagacatgaatgacaattcattgcactgacatggtcttcagacactctatgaactga 454
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct: 874 ctatagacatgaatgacaagtcattgcactgacatggttttcagacactctatggactga 815
Query: 455 gctaatatataatgactccatgtacaccatccccaatacatcatcatgctctcccatgtt 514
|||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct: 814 gctaatatataatgactccacgtactccatcccgaatacatcatcatgctctcccatgtt 755
Query: 515 ggcccaaggaatctactcaagtaaattgtttttccaaggcaggacattaggcagtcttag 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ggcccaaggaatctactcaagtaaattgtttttccaaggcaggacattaggcagtcttag 695
Query: 575 gtaatatcttacaagagccaatagcaaatatcacaaatgccaacaatgaaagaaaaaata 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gtaatatcttacaagagccaatagcaaatatcacaaatgccaacaatgaaagaaaaaata 635
Query: 635 gttgtctgtagtttgtggaa 654
||||||||||||||| ||||
Sbjct: 634 gttgtctgtagtttggggaa 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h11.g1 MSMg01no539_h11.g1 CHROMAT_FILE:
MSMg01no539_h11.g1 PHD_FILE: MSMg01no539_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:26 2005
(554 letters)
>mm_chr10_49195924_49196875
Length = 952
Score = 1044 bits (540), Expect = 0.0
Identities = 550/554 (99%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 1 atttacttcggtatttttctagcttttaaggaaccattacatatcttctagatttcagta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atttacttcggtatttttctagcttttaaggaaccattacatatcatctagatttcagta 260
Query: 61 gaaatataactattccatgatgataagttttactttacttaatgaatcttttaatgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatataactattccatgatgataagttttactttacttaatgaatcttttaatgtgtt 320
Query: 121 agacatagcatgttttttatttctaacccttaaacatgttagagtgaaaaacaaaaacaa 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacatagcatgttttt--tttctaacccttaaacatgttagagtgaaaaacaaaaacaa 378
Query: 181 ataccaatagccacacaaacaacaaacattcacagttgagatattccaagatttaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataccaatagccacacaaacaacaaacattcacagttgagatattccaagatttaaaaat 438
Query: 241 tttgcagtggttcagactgtcttcaaaaagtaaaacctgtacacacacacacaaagacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttgcagtggttcagactgtcttcaaaaagtaaaacctgtacacacacacacaaagacag 498
Query: 301 agtaatgatcttgaatgtacttgaatgctatggttcctctacaagtgtataaagtttgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agtaatgatcttgaatgtacttgaatgctatggttcctctacaagtgtataaagtttgca 558
Query: 361 acatctagtggaagtaaaaggctagtatgatggtttgaatgagaatgggccccattgact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatctagtggaagtaaaaggctagtatgatggtttgaatgagaatgggccccattgact 618
Query: 421 gactcatatttaaatgctagtcaccagggagtgtaactatatgaaaaagattagaaattg 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 gactcatatttaaatgctagtcaccagg-agtgtaactatatgaaaaagattagaaattg 677
Query: 481 gagtaagcctggtgttattggagtaggtgtgccctcactggaggaaatgtgtcactgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagtaagcctggtgttattggagtaggtgtgccctcactggaggaaatgtgtcactgggt 737
Query: 541 gtgatttctgagat 554
||||||||||||||
Sbjct: 738 gtgatttctgagat 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space: 512448
Effective search space used: 512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
