ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACCCTCCTTTCTCATTTACCAGACAGTGTTACAATCACTGCAACCAC
GTTTTTGGTTTTGCTCAAATATTTAATGCCAGCAAATGACCTTGCACAGT
AAAAGAGGAGAGTTTTCTGTGTTTTACACACACACACACACACACACACA
CACACACACACAGAGGGTGATATACTGGTGATATCAATGCAAGTACATGA
AATGCCACTGGACGTCATGCAAAAAAAATGGTTAAAGGATAACTTATGCT
ATGTGTATTTTACTATAATAGGGAAGTGAACAAAATGTCAATAAATAGTT
TTGGTTGTAACCATAATTCAAAAAGATATTTTGAAATACTTCAGTGAAAA
CAAGAAATTGTAGCATAACTGTGTGGTACGTAGTTAGCCAGTAGACAAAG
GAATCAGGAAACAGTGTAAGAAAGAGCTGCACACTTTCTCCTAAGTTCAC
AAAGGCAGGAAAGGTTAAGTTCTGACGGTGGAGTTACACTCAGATGGTCT
GAACACCCTCTTTGCCTAGCTCTGTTCCTTCTGTGAATGTGAAAACACTC
AGCCACCCCAAGTCTGTCCTCTCCTCAGGGATTGCACCACAAACCCCTGG
TTCAAGATCTATGTCCTGACTCCAGGGTGGGTTGGCCAAACCATGAAAAT
TTGAGATGTCAGAAATCTTTTATACCACAAGTTTAGGAATGCTAACTACC
AACCATTTCTGTGCTGAG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCAGAAGACAGCAGTGTGATTGTGTTAAT
GATGCTATATTGGGTCACCAGAGTTTGAAAAGATAAGGGGAATGCAGTTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGT
GGTGGTGGTGGTGGTGGTGGTGGTGGTGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANN
NNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN

Query= MSMg01no540_m20.b1 MSMg01no540_m20.b1 CHROMAT_FILE:
MSMg01no540_m20.b1 PHD_FILE: MSMg01no540_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:12 2005
         (657 letters)



>mm_chr10_14277452_14278508
          Length = 1057

 Score = 1033 bits (534), Expect = 0.0
 Identities = 564/580 (97%), Gaps = 10/580 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   cagcaaatgaccttgcacagtaaaagaggagagttttctgtgtttt----------acac 137
            ||||||||||||||||||||| ||||||||||||||||||||||||          ||||
Sbjct: 1057 cagcaaatgaccttgcacagtgaaagaggagagttttctgtgttttacacacacacacac 998

                                                                        
Query: 138  acacacacacacacacacacacacacacacacagagggtgatatactggtgatatcaatg 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  acacacacacacacacacacacacacacacacagagggtgatatactggtgatatcaatg 938

                                                                        
Query: 198  caagtacatgaaatgccactggacgtcatgcaaaaaaaatggttaaaggataacttatgc 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  caagtacatgaaatgccactggacgtcatgcaaaaaaaatggttaaaggataacttatgc 878

                                                                        
Query: 258  tatgtgtattttactataatagggaagtgaacaaaatgtcaataaatagttttggttgta 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  tatgtgtattttactataatagggaagtgaacaaaatgtcaataaatagttttggttgta 818

                                                                        
Query: 318  accataattcaaaaagatattttgaaatacttcagtgaaaacaagaaattgtagcataac 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  accataattcaaaaagatattttgaaatacttcagtgaaaacaagaaattgtagcataac 758

                                                                        
Query: 378  tgtgtggtacgtagttagccagtagacaaaggaatcaggaaacagtgtaagaaagagctg 437
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 757  tgtgtggtacgtagttagccagtagacaaaggaatcaggaaacagcgtaagaaagagctg 698

                                                                        
Query: 438  cacactttctcctaagttcacaaaggcaggaaaggttaagttctgacggtggagttacac 497
            |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 697  cacagtttctcctaaattcacaaaggcaggaaaggttaagttctgatggtggagttacac 638

                                                                        
Query: 498  tcagatggtctgaacaccctctttgcctagctctgttccttctgtgaatgtgaaaacact 557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  tcagatggtctgaacaccctctttgcctagctctgttccttctgtgaatgtgaaaacact 578

                                                                        
Query: 558  cagccaccccaagtctgtcctctcctcagggattgcaccacaaacccctggttcaagatc 617
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  cagccaccccgagtctgtcctctcctcagggattgcaccacaaacccctggttcaagatc 518

                                                    
Query: 618  tatgtcctgactccagggtgggttggccaaaccatgaaaa 657
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 517  tatgtcctgactccagggtgggttggccaaaccatgaaaa 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)