Query= MSMg01no540_p11.b1 MSMg01no540_p11.b1 CHROMAT_FILE:
MSMg01no540_p11.b1 PHD_FILE: MSMg01no540_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
(512 letters)
>mm_chr10_79310876_79311787
Length = 912
Score = 913 bits (472), Expect = 0.0
Identities = 502/512 (98%)
Strand = Plus / Plus
Query: 1 tgtgcaaaccttggtccttaatttaaaactataggttgaatacagatacctatagcttgt 60
||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 tgtgcaaaccttgctccttaatttaaaactataggttgaatacagatgcctctagcttgt 260
Query: 61 catgcacagaagagaggtaggtagggctgtggtgcctgggcacggggtctgaggacaagc 120
| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 261 cgtgcacagaagagagctaggtagggctgtggttcctgggcacggggtctgaggacgagc 320
Query: 121 cacagagaaggtgaatcctgagtgcatgggccatgaatggagtaagagctgtccaggcgg 180
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 321 cacagagaaggtgaatcctgagtgcatgggccatgaacggagtaagagccgtccaggcgg 380
Query: 181 accatggcaagttatatcttgggtttattgacagagaaattgagaaaatatcatagaggg 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 accatggcaagttatatcttgggtttattgacagagaaatcgagaaaatatcatagaggg 440
Query: 241 ttggtatctgcccagctccagtgcttttaagcattataaattttaatcattataaataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttggtatctgcccagctccagtgcttttaagcattataaattttaatcattataaataca 500
Query: 301 aaggttttgtgtcttttattgggaacgacatgatctaaggtgggatagaaacctccaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggttttgtgtcttttattgggaacgacatgatctaaggtgggatagaaacctccaaat 560
Query: 361 aatgtgtaccacagcacttactgtggttcaatgttggaggctacaaggatgagcccagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtgtaccacagcacttactgtggttcaatgttggaggctacaaggatgagcccagca 620
Query: 421 agtgcagggctgccttctgcccagagtccaaggagagttgcttttagccatttctacccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgcagggctgccttctgcccagagtccaaggagagttgcttttagccatttctacccc 680
Query: 481 aggacctccagaaggatctccaaaggggccta 512
||||||||||||||||||||||||||||||||
Sbjct: 681 aggacctccagaaggatctccaaaggggccta 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p11.g1 MSMg01no540_p11.g1 CHROMAT_FILE:
MSMg01no540_p11.g1 PHD_FILE: MSMg01no540_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:26 2005
(579 letters)
>mm_chr10_79483668_79484646
Length = 979
Score = 1081 bits (559), Expect = 0.0
Identities = 575/581 (98%), Gaps = 2/581 (0%)
Strand = Plus / Minus
Query: 1 catctctaccaaagaatggggtgcagagtgaggctttggaaacagccttccctaga--cc 58
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 877 catctctaccaaagaatggggtgcagagtgaggctttggaaacagccttccctagacccc 818
Query: 59 ccccaccccaccctgcccctcccatccaccccaccccaggtgtctcagtcgctcacccag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ccccaccccaccctgcccctcccatccaccccaccccaggtgtctcagtcgctcacccag 758
Query: 119 ggtggtcctcttctccaggtagctgatgaggtccttcatgtacctggccatgtcttttgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggtggtcctcttctccaggtagctgatgaggtccttcatgtacctggccatgtcttttgc 698
Query: 179 atactgcagtgcagcgtccacacccccttcgcatcgctgcagaagcatgtccacctcttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 atactgcagtgcagcgtccacacccccttcgcatcgctgcagaagcatgtccacctcttc 638
Query: 239 ggggggcaggcaaccttcgggggccagtgctcagtccggatgtccacacctctcgaggcc 298
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 637 ggggggcaggcaacctttgggggccagtgctcagtccggaagtccacacctctcgaggcc 578
Query: 299 ccgccacctcctgcctccccagccccacacccggagacactcaccttcttcacattcctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccgccacctcctgcctccccagccccacacccggagacactcaccttcttcacattcctc 518
Query: 359 cacgttatgtgggggcccctccgtgccagccccataaaggttctccatggactgtgtgag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cacgttatgtgggggcccctccgtgccagccccataaaggttctccatggactgtgtgag 458
Query: 419 gaaccacgttctgttcaggcctcgcctctgccctgcccctctttagttctaacaccctct 478
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 gaaccacgttctgttcaggcctcgcctctgccctgcccctctttagctctaacaccctcg 398
Query: 479 acagctcctcagagagacccagcccaggagatagtcacacagctgagccaggtgcccacc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acagctcctcagagagacccagcccaggagatagtcacacagctgagccaggtgcccacc 338
Query: 539 ctgtgggagatggccactccttcccacaaacaccttgacct 579
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctgtgggagatggccactccttcccacaaacaccttgacct 297
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
