BAC Information

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BAC

Clone NameMSMg01-541E17
Chromosome10 (Build37)
Map Location 89,009,267 - 89,009,594
singlet/doubletsinglet
Overlap genenone
Upstream gene8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4
Downstream geneEG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541E17.T7 (MSMg01no541_e17.b1)MSMg01-541E17.TJ (MSMg01no541_e17.g1)
ACCAG607342AG607343
length772761
length of high quality
(start - end)		597 (48 - 644)640 (79 - 718)
definitionCHROMAT_FILE: MSMg01no541_e17.b1 PHD_FILE: MSMg01no541_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:53 2005CHROMAT_FILE: MSMg01no541_e17.g1 PHD_FILE: MSMg01no541_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGGCATTATTATAGTATCTGTCTGTGACTGCTCATACTTTAT
CCTTATTTCTAAACTCTTATCAAGAGAGATGTAGGGGGTCTCTGAAGGAA
CCCCTAATAAATAATACCTTCACCTCTGCCATAGTTCTGAGCAAGTGGAG
AAATTAAAATGACAAAGATAGAAATGAAAGTGGATGTAATGGCCAGGCCG
GTGAGCATCACTCGGAGGCAGAGGCAGAGGCAGAGAGGCAGAGAGGCAGA
GAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGA
GGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGG
CAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCA
GAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGA
GAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGAGGCAGAGA
GGCAGAGAGGCAGAGAGGCAGAGGCAGCAGAATCATGTCTTCAAGGTCAT
CCTCAGCTACATATTGAGTATGAGCCAGCATGGGCTACCTGAGACCCTGG
NTTTGTGTTTTGCTTTGTTTCTTTGTTATTTTTAATGAAAATGATAACTA
TTAATCATAATGGAAGCCAGAAAGGGAGAGGCATAGTTTTGGGTACTAAG
ATAATTGGGCGGCTGACAGAAG

NACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCGTACAAAGACCTCTGGTC
AAATGAAAAAAAAAGAAAAAGTCTAATTAGATTTCCTGTTACCGACACTG
TTTGTTAGTATTGTTTCTGTCTCCAGTTGTTTTTGGAGAGGGACAACTGT
GCTGGTTTGTTTTTGTCAACTTGACCCAACTCAGAGACACTTAAGACAAG
GGAACCTCAATGGAGAGATTGCTTCCATTGGCCATGGACACATCTGTTGG
GCATTCTCATGATTAGTGTTTGAAATGGAAGGCGCTAGCCCGCTTCGGGC
GATGCTACCCACAGGCAGGTGGTCCTGGACTGTATCAAAAAGTACACTGA
GCAAGCCCATGGAGAGCAAGCCAGTGAGCAGCGGAGCAGGGTTCCTCCAT
GGTTCCTGCATCTGCTCCTACTTAAGTTCCTGTCCTCAGTTCCCACAGTG
ATAACCAGCAATGGGGATATGTGAGCCAAATAAGCCCTTTCCTCCCAATC
TGCTCTTTGTCATAGTGTTGACCGCAGCAGTAGAAAGCAAGTTAGAGCAG
TAGTCTTGGTATCCTATACCTTTTCGTGCTGGGTACTTTAAAAGTTTTAA
TTTTGCTTCCATGTTTACTGCTCCCCCTGTTTCGAGTGGCTTGCCCTCCC
ATAGCATTTATTTCTCAATAAGNGTGTCTCTCTCTGTCTCTGTCTCTCTC
TGTGTGTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_e17.g1 MSMg01no541_e17.g1 CHROMAT_FILE:
MSMg01no541_e17.g1 PHD_FILE: MSMg01no541_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:53 2005
         (640 letters)



>mm_chr10_89008559_89009594
          Length = 1036

 Score =  607 bits (314), Expect = e-178
 Identities = 326/332 (98%), Gaps = 4/332 (1%)
 Strand = Plus / Minus

                                                                        
Query: 309  aaaaagtacactgagcaagcccatggagagcaagccagtgagcagcggagcagggttcct 368
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aaaaagtacaccgagcaagcccatggagagcaagccagtgagcagcggagcagggttcct 977

                                                                        
Query: 369  ccatggttcctgcatctgctcctacttaagttcctgtcctcagttcccacagtgataacc 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ccatggttcctgcatctgctcctacttaagttcctgtcctcagttcccacagtgataacc 917

                                                                        
Query: 429  agcaatggggatatgtgagccaaataagccctttcctcccaatctgctctttgtcatagt 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  agcaatggggatatgtgagccaaataagccctttcctcccaatctgctctttgtcatagt 857

                                                                        
Query: 489  gttgaccgcagcagtagaaagcaagttagagcagtagtcttggtatcctataccttttcg 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 856  gttgaccgcagcagtagaaagcaagttagagcagtagtcttggtatcctataccttttca 797

                                                                        
Query: 549  tgctgggtactttaaaagttttaattttgcttccatgtttactgctccccctgtttcgag 608
            |||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  tgctgggtactttaa----tttaattttgcttccatgtttactgctccccctgtttcgag 741

                                            
Query: 609  tggcttgccctcccatagcatttatttctcaa 640
            ||||||||||||||||||||||||||||||||
Sbjct: 740  tggcttgccctcccatagcatttatttctcaa 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1036
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1026
Effective search space:   646380
Effective search space used:   646380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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