BAC Information

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BAC

Clone NameMSMg01-541H22
Chromosome10 (Build37)
Map Location 88,612,608 - 88,613,153
singlet/doubletsinglet
Overlap geneTmem16d
Upstream geneNup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541H22.T7 (MSMg01no541_h22.b1)MSMg01-541H22.TJ (MSMg01no541_h22.g1)
ACCAG607496AG607497
length778769
length of high quality
(start - end)
551 (63 - 613)209 (67 - 275)
definitionCHROMAT_FILE: MSMg01no541_h22.b1 PHD_FILE: MSMg01no541_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:10 2005CHROMAT_FILE: MSMg01no541_h22.g1 PHD_FILE: MSMg01no541_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTTCCAAACATTAATTTTTAAAAACACTCACTGATTACCAATGG
AGGTGGCTAAAATATTGCTATTATTCAGAAAACTGTAAAGGGGAAAGAAA
GCAAACACTTATCCTGTCTTTCCTATACTAGCACATTTCAAGGTAGCCAA
ATGGTTGATAAAAGAAAGCTCTTTGTGAGAGAACAGCTAAATAGTCATGC
AGTACAGTTTTGTGTTTCTACAGCATTAAGTGTCTCATGCTGGCAGTGCT
GGCCAGACAATCTATGGATTAAACTTATGTAATCCATAAAGGAAGGATAA
CCTCCCATTTGTGTCCATCCATTGGAAGGTAAGGGGTTCTCATGAGAGCT
CACAAGCATCTGCTCTGGACTTCTATACCTCTACCTCCTTATAAATTGCT
TAGCATGAGTTTGTGCCCAAGATCTGGTTTCTAAACTCATGAAACTGTGA
GTCCGAGTATTGGTCTTTGAAGTATCACTCAAGTTAGGATTGCCATGCTA
GCTGGACCCTTGAGAGATAGCTTGGCAGGTTTGCTGTGTCAGTGAATACC
GTGCTGAGATGCCTAAGAACACAGACACGTGTGAACCTTCTTATCCCTCA
TGTGTGTCTCTAGGGCTATAACTGGCATACTATCATTCTTCTCTTCACTG
TCTTCTATCACATCACTCTTGGTTCACATCGTCACAGAATGCAGCCTGAG
TGTCTCTACCCTCNGAGAACTCAGCAGA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCACCTATTACTTCCTGCCTTTTCCTTATTGGAC
ACAGACTTTTTTATTGACAGGTGACACACCCATACAATATGTAAGAGATT
TTTTTCTATAGAGACACATGCATAGAACACACAGGAATCCCATAAAAACA
CAAAAATGGAAGCCATAATTTATATACAAAGAATTTGTATGGGGAAGAGA
GAGGGGAGAGGGAGAGGGAGAGGGAGACCNNCTTTTCNTACCCAAATTCC
TCTCAAAGAGACCTGGTCTCCCAGGAGTACTGACACACAGGCTTGCAGGA
GGGACAAGTCACAGTCAGAGACAGTGAGACCAGCTAGCGCCAGAGATAAC
CAGATGTCAAGAGGCAAGGGCAAAAACATAAGCAACAGAAACCAAGCCTA
CTTGGCATCATCAGAACCCAGTTCTCCCACTACAGCGAGCCCTGGATACC
CCAACACACCACAAAAGCAAGTCTCTGATTTAAAATCACATCTCATGATG
ATGATAGAGGACTTTAAGAAGGATGTAAGTAACTCCTTTAAAAATACAGG
AAAACACAGTTAAACAGAAGTCCTTTAAGAGGAAACATAAAAATCCCTTA
AGGAATTACAGGAAATACAACAAACAGGGGAAGAAATTGAAAAAACCATC
ATCCAGGATCTAAAAATGAAGGTAGAACCATAAAGAAATCCCTATGAGAG
ACAACCTTGGAGAAAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_h22.b1 MSMg01no541_h22.b1 CHROMAT_FILE:
MSMg01no541_h22.b1 PHD_FILE: MSMg01no541_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:10 2005
         (551 letters)



>mm_chr10_88612408_88613358
          Length = 951

 Score =  994 bits (514), Expect = 0.0
 Identities = 538/546 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacattaatttttaaaaacactcactgattaccaatggaggtggctaaaatattgctatt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 aacattaatttttaaaaacactcactggttaccaatggaggtggctaaaatattgctatt 260

                                                                       
Query: 61  attcagaaaactgtaaaggggaaagaaagcaaacacttatcctgtctttcctatactagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcagaaaactgtaaaggggaaagaaagcaaacacttatcctgtctttcctatactagc 320

                                                                       
Query: 121 acatttcaaggtagccaaatggttgataaaagaaagctctttgtgagagaacagctaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatttcaaggtagccaaatggttgataaaagaaagctctttgtgagagaacagctaaat 380

                                                                       
Query: 181 agtcatgcagtacagttttgtgtttctacagcattaagtgtctcatgctggcagtgctgg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgatgcagtacagttttgtgtttctacagcattaagtgtctcatgctggcagtgctgg 440

                                                                       
Query: 241 ccagacaatctatggattaaacttatgtaatccataaaggaaggataacctcccatttgt 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ccagacaatctatggattaaacttatgtaatccgtaaaggaaggataacctcccatttgt 500

                                                                       
Query: 301 gtccatccattggaaggtaaggggttctcatgagagctcacaagcatctgctctggactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccatccattggaaggtaaggggttctcatgagagctcacaagcatctgctctggactt 560

                                                                       
Query: 361 ctatacctctacctccttataaattgcttagcatgagtttgtgcccaagatctggtttct 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 ctatacctctacctccttataaattgcttaggatgagtttgtgcccaagatctggtttct 620

                                                                       
Query: 421 aaactcatgaaactgtgagtccgagtattggtctttgaagtatcactcaagttaggattg 480
           |||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacccatgatactgtgagtctgagtattggtctttgaagtatcactcaagttaggattg 680

                                                                       
Query: 481 ccatgctagctggacccttgagagatagcttggcaggtttgctgtgtcagtgaataccgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 ccatgctagctggacccttgagagatagcttggcaggtttgctgtgtcagtgaataccat 740

                 
Query: 541 gctgag 546
           ||||||
Sbjct: 741 gctgag 746


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)