BAC Information

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BAC

Clone NameMSMg01-541N13
Chromosome10 (Build37)
Map Location 79,868,646 - 80,058,124
singlet/doubletdoublet
Overlap geneUqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e
Upstream geneEG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3
Downstream geneScamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541N13.T7 (MSMg01no541_n13.b1)MSMg01-541N13.TJ (MSMg01no541_n13.g1)
ACCAG607764AG607765
length765759
length of high quality
(start - end)		637 (49 - 685)644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no541_n13.b1 PHD_FILE: MSMg01no541_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:39 2005CHROMAT_FILE: MSMg01no541_n13.g1 PHD_FILE: MSMg01no541_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,057,491 - 80,058,124)(79,868,646 - 79,869,289)
sequence
NNNACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTGTATACCAGGCTGGCCTCGAACTCAGAAATCTGCCTG
CCTCTGCCTCTTGAGTGCTGGGATTAAAGGAGTGGGCCACCTCATCCGGC
TGCAGTATTTATTTTTAAATTTTATTATATTTATTCATTTAATGTTCCTG
GGGATGTGGCATTAAGAAACTCCATGGAGTCTGTGTTCTTTTCTGGCAAG
TGGCTCCCATGAACTGATATCGGGGCTGATGTCTCTCCCTCTTCACACTA
AGGTAGCTCTCATCTCACTGGTCTCCGTTGTTACTCTATTTGTTTGTACC
TGTGTATTTATTTATGTCGTTATGTAATGTGCATGTGTGTGGATGTACAC
ATGGAAGCCAGAGGGCATCTGTGGGGGCTGCTGGTTCTCTCCTCCCATCT
CTGGTGAGCCTGGAAATCAGGTGACTTAGTCCACAGGTGTATGCACAGTG
GTTGGTTGGTTGGTTTCCCCCACTGAACCATCTCACTGGCCCAGAGTGTG
ACTTTTTTTTAAATTATTATTATATGTAAGTACACTGTAGCTTCAGACAC
TCCAGAAGAGGGCATCAACTTTTGTTACGGATGGTTGTGAGTCACCATGT
GGTTGCTGGGATTTGAACTCACGACCTTTGGAAGAGTAGTCAGTGTTCTT
ATCCACTGAGCCATCTCTCCAGCCCGAGTGGGACTTTTTATTTCTTTTGT
ATGTGTCTGCAGGCA

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTATCAGAGGATGGCCATA
AACTCCTGGCTCTTGCCTGCCACCACCCCACCCCTCTACCCCCAGTGCTG
TGACAACCCCTGTGTGGCGCTGTGGATGGACCCTGAGCACCATCTTCTGG
AGACTTCCGGCACCTGTGTGTGTAGTACCGGTTCTATGTACTACACGCAC
ACAAACCCACACATATACATATAATTGGAAATAAACTATTAATAAAAATT
AAACTGGAGAAGATGGCCCTTTTCCCAGAGATCCCAGGTTCAATTTCCAG
CACCCACATGCTTCATAACCATTTCTAGCTCTAGTACCAGGGGAGCCGAT
GGCCTCTTCTCGCCTACCTGGATACTGGGCACGTATACGGTACACAGACA
CGCATGCAAAGAAAACATTCAGGTGAGGGTGGGTGCCCGCTATTCTAGCG
TTCAAGAAGTGTGAGGCAGGATGATTGGTGGGAGTTCCAGACCAACTTGG
GGTTACAAAAACACTGTTTAAACGAAAAAACGAAGGACACGAAAGACTGC
AAAATCAAAGCCAAAGGCTGCAAGTCGCCAGGCTGCACGTCGGAGTTCCG
AGCCGTATGAGTCCAGGGTACCCACCCAGAGCCGCACACAAGGCTACCCA
GGTCAAGCTGGGGAAACCCAGGCTTGGAGCACCTCAGACACCGAACGAAA
GCGATTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_n13.b1 MSMg01no541_n13.b1 CHROMAT_FILE:
MSMg01no541_n13.b1 PHD_FILE: MSMg01no541_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:39 2005
         (637 letters)



>mm_chr10_80057279_80058315
          Length = 1037

 Score = 1180 bits (610), Expect = 0.0
 Identities = 628/634 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtataccaggctggcctcgaactcagaaatctgcctgcctctgcctct 63
           ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 846 ggaattcactctgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctct 787

                                                                       
Query: 64  tgagtgctgggattaaaggagtgggccacctcatccggctgcagtatttatttttaaatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgagtgctgggattaaaggagtgggccacctcatccggctgcagtatttatttttaaatt 727

                                                                       
Query: 124 ttattatatttattcatttaatgttcctggggatgtggcattaagaaactccatggagtc 183
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttattatatttattcatttagtgttcctggggatgtggcattaagaaactccatggagtc 667

                                                                       
Query: 184 tgtgttcttttctggcaagtggctcccatgaactgatatcggggctgatgtctctccctc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgtgttcttttctggcaagtggctcccatgaactgatatcggggctgatgtctctccctc 607

                                                                       
Query: 244 ttcacactaaggtagctctcatctcactggtctccgttgttactctatttgtttgtacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttcacactaaggtagctctcatctcactggtctccgttgttactctatttgtttgtacct 547

                                                                       
Query: 304 gtgtatttatttatgtcgttatgtaatgtgcatgtgtgtggatgtacacatggaagccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtgtatttatttatgtcgttatgtaatgtgcatgtgtgtggatgtacacatggaagccag 487

                                                                       
Query: 364 agggcatctgtgggggctgctggttctctcctcccatctctggtgagcctggaaatcagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agggcatctgtgggggctgctggttctctcctcccatctctggtgagcctggaaatcagg 427

                                                                       
Query: 424 tgacttagtccacaggtgtatgcacagtggttggttggttggtttcccccactgaaccat 483
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgacttagtccacaggtgtgtgcacagtggttggttggttggtttcccccactgaaccat 367

                                                                       
Query: 484 ctcactggcccagagtgtgacttttttttaaattattattatatgtaagtacactgtagc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctcactggcccagagtgtgacttttttttaaattattattatatgtaagtacactgtagc 307

                                                                       
Query: 544 ttcagacactccagaagagggcatcaacttttgttacggatggttgtgagtcaccatgtg 603
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 306 ttcagacactccagaagagggcatcagcttttgttacggatggttgtgagtcaccatgtg 247

                                             
Query: 604 gttgctgggatttgaactcacgacctttggaaga 637
           |||||||||||||||||||| |||||||||||||
Sbjct: 246 gttgctgggatttgaactcaggacctttggaaga 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_n13.g1 MSMg01no541_n13.g1 CHROMAT_FILE:
MSMg01no541_n13.g1 PHD_FILE: MSMg01no541_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:40 2005
         (644 letters)



>mm_chr10_79868446_79869489
          Length = 1044

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtatcagaggatggccataaactcctggctcttgcctgccaccaccccacccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtatcagaggatggccataaactcctggctcttgcctgccaccaccccacccctc 260

                                                                       
Query: 61  tacccccagtgctgtgacaacccctgtgtggcgctgtggatggaccctgagcaccatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccccagtgctgtgacaacccctgtgtggcgctgtggatggaccctgagcaccatctt 320

                                                                       
Query: 121 ctggagacttccggcacctgtgtgtgtagtaccggttctatgtactacacgcacacaaac 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagacttccggcacctgtgcgtgtagtaccggttctatgtactacacgcacacaaac 380

                                                                       
Query: 181 ccacacatatacatataattggaaataaactattaataaaaattaaactggagaagatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacacatatacatataattggaaataaactattaataaaaattaaactggagaagatgg 440

                                                                       
Query: 241 cccttttcccagagatcccaggttcaatttccagcacccacatgcttcataaccatttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttttcccagagatcccaggttcaatttccagcacccacatgcttcataaccatttct 500

                                                                       
Query: 301 agctctagtaccaggggagccgatggcctcttctcgcctacctggatactgggcacgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agctctagtaccaggggagccgatggcctcttctcgcctacctggatactgggcacgtat 560

                                                                       
Query: 361 acggtacacagacacgcatgcaaagaaaacattcaggtgagggtgggtgcccgctattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acggtacacagacacgcatgcaaagaaaacattcaggtgagggtgggtgcccgctattct 620

                                                                       
Query: 421 agcgttcaagaagtgtgaggcaggatgattggtgggagttccagaccaacttggggttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcgttcaagaagtgtgaggcaggatgattggtgggagttccagaccaacttggggttac 680

                                                                       
Query: 481 aaaaacactgtttaaacgaaaaaacgaaggacacgaaagactgcaaaatcaaagccaaag 540
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 aaaaacactgtttaaacgaaaaaacgaagtacacgaaagactgcaaaatcaaagccaaag 740

                                                                       
Query: 541 gctgcaagtcgccaggctgcacgtcggagttccgagccgtatgagtccagggtacccacc 600
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 gctgcaagtcgccaggctgcacgtcggagttccgagccgtaggagtccagggtacccacc 800

                                                       
Query: 601 cagagccgcacacaaggctacccaggtcaagctggggaaaccca 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagagccgcacacaaggctacccaggtcaagctggggaaaccca 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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