Query= MSMg01no542_f03.b1 MSMg01no542_f03.b1 CHROMAT_FILE:
MSMg01no542_f03.b1 PHD_FILE: MSMg01no542_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:19 2005
(641 letters)
>mm_chr10_30254927_30255967
Length = 1041
Score = 1060 bits (548), Expect = 0.0
Identities = 602/622 (96%), Gaps = 6/622 (0%)
Strand = Plus / Minus
Query: 22 gggctatacagagaacccctgtctcaaaaaaaaa--caaaaaagcaagaaagcaagactc 79
||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||
Sbjct: 881 gggctatacagagaaaccctgtctc---aaaaaacccaaaaaa-caagaaagcaagactc 826
Query: 80 cattcagggaagtgctatatgaatttacagtaaatttccaaaagtctgtgtgtagttgaa 139
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 gattaagggaagtgctatatgaatttacagtaaatttccaaaagtctgtgtgtagttgaa 766
Query: 140 tgtgaatttaaagaaatacataggaaaaggaactttattttaacttaggtttctgtttct 199
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 765 tgtgaatttaaagaaatacataggaaatggaactttatttcaacttaggtttctgtttct 706
Query: 200 gcttgaaattgattgtgagattgagtgtgaaactaatgtttcaggtttctgtcagtcctc 259
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acttgaaattgtttgtgagactgagtgtgaaactaatgtttcaggtttctgtcagtcctc 646
Query: 260 tcatctaacccagaatgtgtggggcattctaacccagattaactctttcaatgcccagtg 319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 645 tcatctaacccagaatgtgtggggcattctaacccagatcaactctttcaatgcccagtg 586
Query: 320 agtaatctgagttccaggccttatttagctgtgaagtctataggcgtggaactccccagt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 agtaatctgagttccaggccttatttagctgtgaagtctataggcgtggaactccccagt 526
Query: 380 caccccgcatctgcatctcttgtgttggaatctcttgtgctgatggaatggggacacagt 439
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 525 caccccgcatctgcatctcttgtgttggaatctcttgtgctgatggaatgcggacacagt 466
Query: 440 ttgaagttttgtgtaactttgtgacattacaaactgccacagtttcctggtgtatccctt 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 465 ttgaagttttgtgtaactttgtgacattacaaactgccacagtttcctggtgtatacctt 406
Query: 500 ctctcttgacgtgaagcttctttggtattatccacagcccagatgatttcagggaacggc 559
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 405 ctctcttgacaagaagcttctttggtattttccacagcccagatgatttcagggaacggc 346
Query: 560 gagatagttgtagtctgaccatgttctttctctttgcccagtgaggtgaagtgatgtcac 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagatagttgtagtctgaccatgttctttctctttgcccagtgaggtgaagtgatgtcac 286
Query: 620 ttggaattcccaagtgtgatgc 641
||||||||||||||||||||||
Sbjct: 285 ttggaattcccaagtgtgatgc 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_f03.g1 MSMg01no542_f03.g1 CHROMAT_FILE:
MSMg01no542_f03.g1 PHD_FILE: MSMg01no542_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:19 2005
(687 letters)
>mm_chr10_30125519_30126608
Length = 1090
Score = 1301 bits (673), Expect = 0.0
Identities = 684/689 (99%), Gaps = 3/689 (0%)
Strand = Plus / Plus
Query: 1 attaagaacctatttggactttagtctgtggaaatgataataaccccgtggaattcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagaacctatttggactttagtctgtggaaatgataataaccccgtggaattcccaa 260
Query: 61 caggaaacagctatagacatgaaaagaaaacaccaccactgtgtttaaagccgaggaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaaacagctatagacatgaaaagaaaacaccaccactgtgtttaaagccgaggaacc 320
Query: 121 caaaaaacactgggcagagccttacaaagcagaacaatagcccaaggaagacgaaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaaacactgggcagagccttacaaagcagaacaatagcccaaggaagacgaaaactg 380
Query: 181 tgggagcgccagaccgtgaaatggagagacaatggacgctggagtggggctggacactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggagcgccagaccgtgaaatggagagacaatggacgctggagtggggctggacactca 440
Query: 241 aagggagctattaattcaagcaagatcaaaacagaaatcaatctatccgtgtgacttcca 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 aagggagctattaattcaagcaagatcaaaacagaaatcaatctagccgtgtgacttcca 500
Query: 301 gaagatcattaaagactaattactttctgtctacctcaatcgctttattgctgtgactgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagatcattaaagactaattactttctgtctacctcaatcgctttattgctgtgactgg 560
Query: 361 tacgctgtcctttctctgtctagatcctggagagaggaggaaaatgttttgcagctcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacgctgtcctttctctgtctagatcctggagagaggaggaaaatgttttgcagctcaga 620
Query: 421 tcatggcaagctgcatgaccccaccctagcgcctagatactaattcccaagagcttctaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tcatggcaagctgcatgaccccaccctagcgcctagatactaattcccgagagcttctaa 680
Query: 481 acactcctacagacttaccagcatacagcttatgtgtgtgactaaggacaactaattaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acactcctacagacttaccagcatacagcttatgtgtgtgactaaggacaactaattaca 740
Query: 541 taaagtaatag---gagttattccactttcaaaaatgaaagataaaaatcaaggtttatg 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaagtaatagcaggagttattccactttcaaaaatgaaagataaaaatcaaggtttatg 800
Query: 598 agaaacgtgctggaatttcttaaacttttaaatttaattgaattggaggcagaggactaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaaacgtgctggaatttcttaaacttttaaatttaattgaattggaggcagaggactaa 860
Query: 658 tacactttgcaaagatgcaacgtgtttct 686
|||||||||||||||||||||||||||||
Sbjct: 861 tacactttgcaaagatgcaacgtgtttct 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1090
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1080
Effective search space: 731160
Effective search space used: 731160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
