Query= MSMg01no542_k21.b1 MSMg01no542_k21.b1 CHROMAT_FILE:
MSMg01no542_k21.b1 PHD_FILE: MSMg01no542_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:47 2005
(577 letters)
>mm_chr10_66228399_66229381
Length = 983
Score = 998 bits (516), Expect = 0.0
Identities = 551/566 (97%), Gaps = 8/566 (1%)
Strand = Plus / Plus
Query: 5 gaattcattgaactaaacaaaatatattttttaaaaaa-gaaaagagcttttccaacatt 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattcattgaactaaacaaaatatattttttaaaaaaagaaaagagcttttccaacatt 264
Query: 64 tgttccgaatatcttctacccac-----atattctagctgtagatatggggggttaagct 118
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 tgttccgaatatcttctacccacctaatatattctagctgtagatatggggggttaagct 324
Query: 119 gtagacaggaataaacagagataaggaaagagacagaaagacaaaatgaccttaccattt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtagacaggaataaacagagataaggaaagagacagaaagacaaaatgaccttaccattt 384
Query: 179 taaacatggatctcgccttgtggtcacttcatttcattaagctatgctgtgtctgacatg 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacatggatctcaccttgtggtcacttcatttcattaagctatgctgtgtctgacatg 444
Query: 239 gtagttcaagacctgtggcaaaatctgcagcaagagattccttgtattcagaaaagttaa 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 gtagttcaagacctgtggcaaaatctgcagcaagagattccttgtattcagaaaggttaa 504
Query: 299 gactcattatagataaaaccaagcagggggtgctaagagacaggagtgaactgtgttgtg 358
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 gactcattatagataaaaccaagcagggggtgctgggagacaggagtgaactgtgttgtg 564
Query: 359 tttataaaaagataaggggggg--ctatgttctatggaggtatagtcaggtgtgggggga 416
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttataaaaagataagggggggggctatgttctatggaggtatagtcaggtgtgggggga 624
Query: 417 ggggtgcctcatttcctcctgagggaccagtcacaggacagtatagtaaaatagagttta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggggtgcctcatttcctcctgagggaccagtcacaggacagtatagtaaaatagagttta 684
Query: 477 ttcagggtatgaagagggaagataaaagggtagtagaggcagagaaaaggagagagagag 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 685 ttcagggtatgaagagggaagataaaagggtagtagaggcagagaaaaggagggagagag 744
Query: 537 agagagagagagagagagagagagag 562
||||| |||||||||||||||||||
Sbjct: 745 ggagagggagagagagagagagagag 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 983
Length adjustment: 10
Effective length of query: 567
Effective length of database: 973
Effective search space: 551691
Effective search space used: 551691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_k21.g1 MSMg01no542_k21.g1 CHROMAT_FILE:
MSMg01no542_k21.g1 PHD_FILE: MSMg01no542_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:48 2005
(678 letters)
>mm_chr10_66378270_66379348
Length = 1079
Score = 1226 bits (634), Expect = 0.0
Identities = 668/680 (98%), Gaps = 3/680 (0%)
Strand = Plus / Minus
Query: 1 tcagaccttcccctgaagcaggtcatgaaatccagactgtgagaggtgctcacccagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 744 tcagaccttcccctgaagcaggtcatgaaatccagactgtgagaggtgctcaccctgtaa 685
Query: 61 ttagagaagaggaacgttcttgttaccaaaagctgaggacagagagaaggagccagacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagagaagaggaacgttcttgttaccaaaagctgaggacagagagaaggagccagacta 625
Query: 121 gccgaactctccgaaggttatcatgggctcatgacaaacctgtttgtctaatcatctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccgaactctccgaaggttatcatgggctcatgacaaacctgtttgtctaatcatctctg 565
Query: 181 tccccaacaccactcacttcctccgacttggacgttcacaagtggcctcacctctttaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tccccaacaccactcacttcctccgacttggacgttcacaagtggcctcacctctttaga 505
Query: 241 tctaggaaaccgaaacacagcttgcgtggttttcttcggtgaatctgaatatgacttttg 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 tctaggaaaccgaaacacagcttgcgtggttttcttcggtgaatctgaatctgacttttg 445
Query: 301 ttgtagattcttcggcccggaaaaaatagcagcggaag--gagagagagaaatccttccc 358
||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 444 ttgtagattcttcagccaggaaaaaatagcagc-gaaggagagagagagaaatccttccc 386
Query: 359 tggtgagctggattcctcgaagttgcagactgtgaaaagcgggatgcagttgtaagtaac 418
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tggtgagctggattccttgaagttgcagactatgaaaagcgggatgcagttgtaagtaac 326
Query: 419 ccagcactctcctacagtgagaggggttgtccaggcagaggagccatccggcagccatca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagcactctcctacagtgagaggggttgtccaggcagaggagccatccggcagccatca 266
Query: 479 ggccagcaagcctggagtacccacttaggagtagtggaagcaagagagaccctgcctcag 538
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ggccagcaagcctggagtacctacttaggaatagtggaagcaagagagaccctgcctcag 206
Query: 539 caagggggaagaatcaactcttacaagttatcctctgaactccacacatgagctgtagca 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 caagggggaagaatcaactcttacaggttatcctctgaactccacacatgagctgtagca 146
Query: 599 cataaaacaaataaataaaaaatttcctctcaacaccaacctctaactttaaaaaaatgt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cataaaacaaataaataaaaaatttcctctcaacaccaacctctaactttaaaaaaatgt 86
Query: 659 cattttatgggctggagtga 678
||||||||||||||||||||
Sbjct: 85 cattttatgggctggagtga 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space: 714092
Effective search space used: 714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
