BAC Information

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BAC

Clone NameMSMg01-543H21
Chromosome10 (Build37)
Map Location 73,101,001 - 73,101,636
singlet/doubletsinglet
Overlap genenone
Upstream geneZwint, LOC432471, LOC544705, LOC100039981
Downstream geneLOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543H21.T7 (MSMg01no543_h21.b1)MSMg01-543H21.TJ (MSMg01no543_h21.g1)
ACCAG609015AG609016
length779783
length of high quality
(start - end)
627 (49 - 675)636 (79 - 714)
definitionCHROMAT_FILE: MSMg01no543_h21.b1 PHD_FILE: MSMg01no543_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:53 2005CHROMAT_FILE: MSMg01no543_h21.g1 PHD_FILE: MSMg01no543_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAA
ATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGACTGGGCGAAG
TGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGTTTCTGTTAGTG
GGATTCTTACGTTTACCTTTTGCCATCTGGCAATCTCTGGAGTTAGTTGT
TATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCCTC
AATCAGCAGGCGTGGGAGACAAGCTCTCTCCTCTGAGTTTCAGTGGTCAG
AGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCAGGGAAGGTGCACAGTTAT
CTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATC
TTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCGGTTGTCTGGA
GTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTCGCCAGGAAGGTG
GCCAGTTGTCTGGAGCTGAAGATGGCGCCGCCCCAGAAGTTCTGCGACTC
TCGCCCGTCCCAGAAACGGCTGGCCTCTGTATTCCACACGGTCACCCGTG
CAGCCTGCCCTCCGCGGAGTCCCAGAGCCAAGAAGGCTCCCGCCGGCGCC
TGTGACACAAACCTCTCAGGCAGGGCAGACCCCCGTGCTCTCACCAGGAA
GGTGGCTAGCTGTCTGGAGCTGAAGATGC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAAGCTGGAGTGG
TTGGGTTGGGGAGCAGGGCAGGAGGTGGGGTGTAGAGGACATTTGGAGAG
GAAACTAGCAAAGGGGATAGCATCTGAAATGTAAATGAAGAAAATATCTA
ATTAATAATAAAGAACTTAGTCAAGTTTACTTCAGTGTGTTTAGGCTCTT
GCTAGGAAGTTGGGACATGCCTTGTTCTTGATGCTCTGCTTGAAAGTTTG
GGGTAATGATAAGCATCCTGAAAATGTCCATGCCCATTTCTACAGTGCAG
AAAGGGGGGCCCAAAGATAGAAAGAGGCAACCAGAGGGACACCAGAGAAA
TACTGTTAGAGGCCAAACCAATTGGCCTCAAAACCTAAATACGCTCCAAT
CTTACTGAAGACAAAATTATTTTACTATCTACGCATTTACATAGGGTCTC
TTATTATTTACAAGAGGGATCATCTTAAATATTTTAAAAAAGCATTTTTG
ATACCAAATTTTAATATTGGTAAGTTTACCATACACCATATATAGCATCA
TCGAACTGCCAAGCTTTTTTAGTATTAATGGTCAATGCGCCAAAATGGCA
AACAATGTCCTCTAAAGGGATAAAATATATCCTTACTAACCAAGAATTTT
GCTGTTGAATGGCTTTAAATAATGAAAATGTCTCTCCCTATAATTTCTAA
CAGAAATACTCCATCCACACACAATAGCAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_h21.g1 MSMg01no543_h21.g1 CHROMAT_FILE:
MSMg01no543_h21.g1 PHD_FILE: MSMg01no543_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:53 2005
         (636 letters)



>mm_chr10_73100665_73101700
          Length = 1036

 Score = 1160 bits (600), Expect = 0.0
 Identities = 627/636 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagggccaggaagctggagtggttgggttggggagcagggcaggaggtggggtgtagagg 60
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 972 cagggccaggaagctggagtggttgggttggagagcagggcagggggtggggtgtagagg 913

                                                                       
Query: 61  acatttggagaggaaactagcaaaggggatagcatctgaaatgtaaatgaagaaaatatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 912 acatttggagaggaaactagcaaaggggatagtatctgaaatgtaaatgaagaaaatatc 853

                                                                       
Query: 121 taattaataataaagaacttagtcaagtttacttcagtgtgtttaggctcttgctaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 taattaataataaagaacttagtcaagtttacttcagtgtgtttaggctcttgctaggaa 793

                                                                       
Query: 181 gttgggacatgccttgttcttgatgctctgcttgaaagtttggggtaatgataagcatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gttgggacatgccttgttcttgatgctctgcttgaaagtttggggtaatgataagcatcc 733

                                                                       
Query: 241 tgaaaatgtccatgcccatttctacagtgcagaaaggggggcccaaagatagaaagaggc 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 732 tgaaaatgtccatgcccatttctacagtgcaggaaggggggcccaaagatagaaagaggc 673

                                                                       
Query: 301 aaccagagggacaccagagaaatactgttagaggccaaaccaattggcctcaaaacctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaccagagggacaccagagaaatactgttagaggccaaaccaattggcctcaaaacctaa 613

                                                                       
Query: 361 atacgctccaatcttactgaagacaaaattattttactatctacgcatttacatagggtc 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 612 gtacgctccaatcttactgaagacaaaattattttactatctacgcatttacacagggtc 553

                                                                       
Query: 421 tcttattatttacaagagggatcatcttaaatattttaaaaaagcatttttgataccaaa 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tcttattatttacaagagggagcatcttaaatattttaaaaaagcatttttgataccaaa 493

                                                                       
Query: 481 ttttaatattggtaagtttaccatacaccatatatagcatcatcgaactgccaagctttt 540
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 492 ttttaatattggtaagtttaccatataccatatataccatcatcgaactgccaagctttt 433

                                                                       
Query: 541 ttagtattaatggtcaatgcgccaaaatggcaaacaatgtcctctaaagggataaaatat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttagtattaatggtcaatgcgccaaaatggcaaacaatgtcctctaaagggataaaatat 373

                                               
Query: 601 atccttactaaccaagaattttgctgttgaatggct 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 372 atccttactaaccaagaattttgctgttgaatggct 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)