Query= MSMg01no543_i06.b1 MSMg01no543_i06.b1 CHROMAT_FILE:
MSMg01no543_i06.b1 PHD_FILE: MSMg01no543_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
(613 letters)
>mm_chr10_33128510_33129522
Length = 1013
Score = 1015 bits (525), Expect = 0.0
Identities = 584/613 (95%), Gaps = 20/613 (3%)
Strand = Plus / Minus
Query: 5 gaattctgagt---ctttgggataattgtgtagggggcaaggtattcttagaatttccat 61
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaattctgagtccac--tgggataattgtgtagggggcaaggtattcttagaatttccat 648
Query: 62 tttcacattaagaaaaccagtatttctgtgaaaattcaattgaatgttatgcatgaagcc 121
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 647 tttcacattaagaaaaccagtatttctgtgaaaatgcaactgaatgttatgcatgaagcc 588
Query: 122 tttcaaagttcctgggtactaagtagtcagtgtgcctttgtta-ctttattagtatttgt 180
|||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||||
Sbjct: 587 tttcaaagttcctgggtactaagtagtcagtgtgcctttgctatc-ttactagtatttgt 529
Query: 181 ttttctgcactcagaaattaattttaaagagtaagtatttaagtttattttaagataaat 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 528 ttttctgcactcagaaattaattttaaaaagtaagtatttaagtttattttaagataaat 469
Query: 241 cggtggcacttttgtttgaattatattgatgatattctctaaatgcctggttttcacatc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 468 cggtggcacttttgtttgaattatattgatgatattctctaaacgcctggtttccacatc 409
Query: 301 atctgagtaagcattctcaagctgttaggtcaacatagaaaaacaattattctctgtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atctgagtaagcattctcaagctgttaggtcaacatagaaaaacaattattctctgtaaa 349
Query: 361 cccagataggcacaattttaattgttgtctttgtaactgaagtgcttaatattttatgca 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 348 cccagataggcacaattttaattgttgtctttgtaactgaagtgc-taatattttatgca 290
Query: 421 gtctttttctgggcaagatacacaaggagtttggtggtcagattggtttgttgagtagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtctttttctgggcaagatacacaaggagtttggtggtcagattggtttgttgagtagac 230
Query: 481 tgaaaacatatactaaagacagagggctttgtctctgtgcagctcagattacatacacac 540
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 229 tgaaaacatatactaaagacagag------------gtgcagctcagattacatacacac 182
Query: 541 attgttcctggttcattctgacatcacttcatcccctgtcttctttgtgtgcttgtaagg 600
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgttcctggttcattcagtcatcacttcatcccctgtcttctttgtgtgcttgtaagg 122
Query: 601 taccatgtttctg 613
|||||||||||||
Sbjct: 121 taccatgtttctg 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_i06.g1 MSMg01no543_i06.g1 CHROMAT_FILE:
MSMg01no543_i06.g1 PHD_FILE: MSMg01no543_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:55 2005
(608 letters)
>mm_chr10_33007112_33008119
Length = 1008
Score = 1152 bits (596), Expect = 0.0
Identities = 605/608 (99%)
Strand = Plus / Plus
Query: 1 cattcaactctgtggtcaacaagcagatatagacatcccagacagaaataatctgatagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcaactctgtggtcaacaagcagatatagacatcccagacagaaataatctgatagg 260
Query: 61 ttatagtagcacttgtattatttggacatggtttgattagctacttactggtgattggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagtagcacttgtattatttggacatggtttgattagctacttactggtgattggct 320
Query: 121 ggaggacagcttttacaactgtcaacacccaagatccttgtaaaattcctaagttgctaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ggaggacagcttttacaactgtcaacacccaagatccttgtaaaattcctaagttgataa 380
Query: 181 gtttcattcaaactattcacatagaagacagaagttgtagctcatagaagttgtatctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcattcaaactattcacatagaagacagaagttgtagctcatagaagttgtatctca 440
Query: 241 ttgcacaggaatggagagacctaggctctgaagatattctcagttcaatattctcctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcacaggaatggagagacctaggctctgaagatattctcagttcaatattctcctgct 500
Query: 301 tatttaacccaacaatttgaacttccctcaattattaccaagactcttctatctgagtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttaacccaacaatttgaacttccctcaattattaccaagactcttctatctgagtta 560
Query: 361 gttgatccatagaacagagagaatgaattgtcattaagttagataacagtttttcttccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgatccatagaacagagagaatgaattgtcattaagttagataacagtttttcttccc 620
Query: 421 ttgtccttttgtgaagatttatcttgtctctacattcagtcttatttgcctagcttgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtccttttgtgaagatttatcttgtctctacattcagtcttatttgcctagcttgttt 680
Query: 481 ccttaaaatagctagtcatgaagtcatccttaatgagacacttctaatgcaacagtggat 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ccttaaaatagctagtcatgaagtcatccttcatgagacacttctaatgcaacagtggat 740
Query: 541 aggcatcattaacaagtttaagtaaaataatgcaatgagctttggtgcagtacataatga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 aggcatcattaacaagtttaagtaaaataatgcaatgagctttggtgcagtaaataatga 800
Query: 601 gaaatgta 608
||||||||
Sbjct: 801 gaaatgta 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
