BAC Information

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BAC

Clone NameMSMg01-543L20
Chromosome10 (Build37)
Map Location 100,384,233 - 100,527,035
singlet/doubletdoublet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543L20.T7 (MSMg01no543_l20.b1)MSMg01-543L20.TJ (MSMg01no543_l20.g1)
ACCAG609204AG609205
length783780
length of high quality
(start - end)
712 (46 - 757)567 (75 - 641)
definitionCHROMAT_FILE: MSMg01no543_l20.b1 PHD_FILE: MSMg01no543_l20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:12 2005CHROMAT_FILE: MSMg01no543_l20.g1 PHD_FILE: MSMg01no543_l20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,526,328 - 100,527,035)(100,384,233 - 100,384,799)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGAAATGTCTAATATTCAATAGTTTCAATTTGCCATAAGAAGA
ATTTTTTCCATTTTAATCTCATAGGTAATCATATAGTAGATGTTTTTAAG
TGTGTACCCTTCACTAGCATTTCTTAATTCCTTCCAGAAATTTCATAGTA
ACAATTATTATTTGCATTGATATTTTATCATATGTAGCTATACTTAAATG
ATTCTAATGTGTTACACAATTGACACTGTGAATATCTTTTCTAAATTTAA
TTGACCACTTAAACTGTTCTTTCCCTTTGGAAATATGGTACCTAGGATGA
TAAATTTTAGAGAGAAATATAAAATTTCAAGTGTGAAATAGAATTTAAAA
TACAGTTAATCCCCTTCAAAATTGTAACTTTTCCTTATATACGATGGAAT
GACTAAAACTATTTTATGAAACATTTCTTTCTAAAGTCTACTTAGCTTGT
TATAAAGTGTTAGACTTCCGGCCTTATCAACCTTGTAAAATGTGTTAAAT
ATACTTTCTTCACACATCTATATCCATGGGTAAGAAAAGCATGAATAATA
CTTTTATCAAACTTTAATTATGACATAAAAGGGCTGAGGTGCTTAAGATA
TATTAAAATTGAAACCATACAAATGGCACATTCAGAAAAAATACTTTGTG
ACAGATTTTTATGGAAAAATCAAGTATATTCATAATTTCTTTTAATTTGA
CCATTTTTTCCTTGTCAAAAGCTTTGTGATTAA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGGTGTAATACACCATCAATTTAG
GAAGTATTGAAGAAGCAATGCTAATTACAGTGTGAACTTTAGGAACTCTT
GTTGACAGTAAGGGCCCTGCAATAAAATTAGGAATGACACAGGGTAACTA
ATTGGTGATTCACAGTGCAATGTGAAAAGCTAGAGGACCCCTTAGCACAG
GGAGAAACCTTCCAGCAATGAGATCAGAACACAGAGGAATCTGGAGTCAC
CTTTTGAAAGTAAAAGTAGCTGAATTCTAAAGCGGTTACATCTTTAGACT
CCTTTAGGCCTGATGATCTCAAATTGCCTCATTCTCCAAGGCTATAAAAG
TGGCCCAATTCTGGTGCTGGAAAGATGGCTGAGTCCTTAAGGGTAATTAA
CTGTTCTTCTAGAGAATGCAGGTTCTTCTAGCACTCACATGGCAGTTAAA
ACAGTCTATAACTCCAAGTCTAGGGGATCAGACACTTAGACAGATACACA
TGTGGGCAAAACACCCACATACAGAAAATAAAGATAAGCAAATCATAAAA
TATGGCACAATTAATTTTGGTGGTGGTGGTTTTGTTTTGTTGTTGGGGGG
GGATAGGATTCTCTGACCATAATATATAAAGATGGCATAAAGGGTGAGGT
ATGGAACTAGTGTGAATTTAGAACATACAGATGATACCTAGCCTAACAGA
GGAATAGATTTAATCCTACATTTATTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_l20.b1 MSMg01no543_l20.b1 CHROMAT_FILE:
MSMg01no543_l20.b1 PHD_FILE: MSMg01no543_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
         (712 letters)



>mm_chr10_100526124_100527235
          Length = 1112

 Score = 1369 bits (708), Expect = 0.0
 Identities = 708/708 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgaaatgtctaatattcaatagtttcaatttgccataagaagaattttttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gaattccttgaaatgtctaatattcaatagtttcaatttgccataagaagaattttttcc 853

                                                                       
Query: 65  attttaatctcataggtaatcatatagtagatgtttttaagtgtgtacccttcactagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 attttaatctcataggtaatcatatagtagatgtttttaagtgtgtacccttcactagca 793

                                                                       
Query: 125 tttcttaattccttccagaaatttcatagtaacaattattatttgcattgatattttatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tttcttaattccttccagaaatttcatagtaacaattattatttgcattgatattttatc 733

                                                                       
Query: 185 atatgtagctatacttaaatgattctaatgtgttacacaattgacactgtgaatatcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atatgtagctatacttaaatgattctaatgtgttacacaattgacactgtgaatatcttt 673

                                                                       
Query: 245 tctaaatttaattgaccacttaaactgttctttccctttggaaatatggtacctaggatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tctaaatttaattgaccacttaaactgttctttccctttggaaatatggtacctaggatg 613

                                                                       
Query: 305 ataaattttagagagaaatataaaatttcaagtgtgaaatagaatttaaaatacagttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ataaattttagagagaaatataaaatttcaagtgtgaaatagaatttaaaatacagttaa 553

                                                                       
Query: 365 tccccttcaaaattgtaacttttccttatatacgatggaatgactaaaactattttatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tccccttcaaaattgtaacttttccttatatacgatggaatgactaaaactattttatga 493

                                                                       
Query: 425 aacatttctttctaaagtctacttagcttgttataaagtgttagacttccggccttatca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aacatttctttctaaagtctacttagcttgttataaagtgttagacttccggccttatca 433

                                                                       
Query: 485 accttgtaaaatgtgttaaatatactttcttcacacatctatatccatgggtaagaaaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 accttgtaaaatgtgttaaatatactttcttcacacatctatatccatgggtaagaaaag 373

                                                                       
Query: 545 catgaataatacttttatcaaactttaattatgacataaaagggctgaggtgcttaagat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 catgaataatacttttatcaaactttaattatgacataaaagggctgaggtgcttaagat 313

                                                                       
Query: 605 atattaaaattgaaaccatacaaatggcacattcagaaaaaatactttgtgacagatttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atattaaaattgaaaccatacaaatggcacattcagaaaaaatactttgtgacagatttt 253

                                                           
Query: 665 tatggaaaaatcaagtatattcataatttcttttaatttgaccatttt 712
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tatggaaaaatcaagtatattcataatttcttttaatttgaccatttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
Query= MSMg01no543_l20.g1 MSMg01no543_l20.g1 CHROMAT_FILE:
MSMg01no543_l20.g1 PHD_FILE: MSMg01no543_l20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:12 2005
         (567 letters)



>mm_chr10_100384033_100384999
          Length = 967

 Score = 1089 bits (563), Expect = 0.0
 Identities = 566/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggtgtaatacaccatcaatttaggaagtattgaagaagcaatgctaattacagtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actggtgtaatacaccatcaatttaggaagtattgaagaagcaatgctaattacagtgtg 260

                                                                       
Query: 61  aactttaggaactcttgttgacagtaagggccctgcaataaaattaggaatgacacaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactttaggaactcttgttgacagtaagggccctgcaataaaattaggaatgacacaggg 320

                                                                       
Query: 121 taactaattggtgattcacagtgcaatgtgaaaagctagaggaccccttagcacagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactaattggtgattcacagtgcaatgtgaaaagctagaggaccccttagcacagggag 380

                                                                       
Query: 181 aaaccttccagcaatgagatcagaacacagaggaatctggagtcaccttttgaaagtaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccttccagcaatgagatcagaacacagaggaatctggagtcaccttttgaaagtaaa 440

                                                                       
Query: 241 agtagctgaattctaaagcggttacatctttagactcctttaggcctgatgatctcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagctgaattctaaagcggttacatctttagactcctttaggcctgatgatctcaaat 500

                                                                       
Query: 301 tgcctcattctccaaggctataaaagtggcccaattctggtgctggaaagatggctgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcctcattctccaaggctataaaagtggcccaattctggtgctggaaagatggctgagt 560

                                                                       
Query: 361 ccttaagggtaattaactgttcttctagagaatgcaggttcttctagcactcacatggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttaagggtaattaactgttcttctagagaatgcaggttcttctagcactcacatggca 620

                                                                       
Query: 421 gttaaaacagtctataactccaagtctaggggatcagacacttagacagatacacatgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaaaacagtctataactccaagtctaggggatcagacacttagacagatacacatgtg 680

                                                                       
Query: 481 ggcaaaacacccacatacagaaaataaagataagcaaatcataaaatatggcacaattaa 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcaaaacaccaacatacagaaaataaagataagcaaatcataaaatatggcacaattaa 740

                                      
Query: 541 ttttggtggtggtggttttgttttgtt 567
           |||||||||||||||||||||||||||
Sbjct: 741 ttttggtggtggtggttttgttttgtt 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)