BAC Information

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BAC

Clone NameMSMg01-543M07
Chromosome10 (Build37)
Map Location 108,440,048 - 108,440,637
singlet/doubletsinglet
Overlap geneSyt1
Upstream genePpp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M07.T7 (MSMg01no543_m07.b1)MSMg01-543M07.TJ (MSMg01no543_m07.g1)
ACCAG609226AG609227
length779754
length of high quality
(start - end)
---590 (132 - 721)
definitionCHROMAT_FILE: MSMg01no543_m07.b1 PHD_FILE: MSMg01no543_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:14 2005CHROMAT_FILE: MSMg01no543_m07.g1 PHD_FILE: MSMg01no543_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTACCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAACTCTTTTTCCAACCAACATTGATCACTTTTAGCATAC
CCGAGAAAAGTGAAGCTGCTGACACCATTAAAACTGACAAAGAAATGATG
GAAAAAAAAAAAAACAGAAGCCAGGGATTGATTGAATATTTTATATCGTA
TATGAAAAATATGCCCAGAAAAAAAAACTTATAAGGGATCCCACTACCGT
CTTCCTTAGCTTTGGATGACAAGCTCTACCATTACCCCCCTAGGACTCAT
GCTTATTTTCTCATCTTTCTCTTGCACCTTTCTCTGTAACCCCGCTGTTA
TCAGTACTGTATCTGATTGTACGCATTGTACGCGTCTGATACCCCCCTGT
CTTACAACCTATATCATTTCCCACGACCCCCCTTTAGCCCCTAACGGATA
ATCCTCCATCCACTGACCTTACACCCCACTTTTTGGCCCATTTCCCGCTT
CCCTTCTTTTCTCGCTTCCGATGACTGCCTAACCCGTCCCCCCCGCAATC
CCATTTCCCCGTTCCCTTCCCCAATCCCTCCCTCCCCCCTACTAAGGTCG
ATATATATCATCCTTTCTAATTACGCCTACGTAAAACCCCTCTCTTATAT
TTCGCATGCTATCCAAGAACGGGTCGATGTATTCCCCCCCCTTTCTTTTC
TTATCCTTTCACATATCCCCCACTCTCCCCCCACTTTCTCTGTCTCCCCC
TTTCCTTCTACCTTTTTTATTCCTCCCTC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGGAGTAGTGACATAGCCAG
AGAGCTGAAATAATAATATCGTCTACTCATGCAGTAAGCAGTAAAATGCT
TCAATGACTAAGTACAGGTAAAAAAGTCAGAATCCAGGAGAAATAAAAAT
GGTTCCTATGTGCTCAATATGTCCTTGATGACAGAATCTCAAAGGCATGG
CAGGATTCATCTCCCTCCTTGTTCCTAGAGAAGTCAAGCTCTCTTCTACC
ATCAATATTTATTATGTGTTTTTGAGGAGTTGCTCAGAAAGTATCTATGA
CTCCCTAGAGGGAAAAATCATCAAGATGACATAAAAAAAATTTAAACCTT
AAAAAAAAAAGTGGTATAGTTTGGGCTTAGGGATATGCTGGTTTTCTTTT
AAAATGTCACATTTTGATTGCTAGTCTTAGACATGTCTTGTAGTGATTTG
CTTGACTTTTAAATTTTAACATAGTAATTTAAGCAAGACATTTAAAACAG
ATCCCTGCAAGTTATGGCATGTGCGACTCATACAATGCCTGTATACAGAG
AGGAAACCCACACGTTTTTATGCATACAGCAGTCCTGCTTACATGTACAT
ACTTTTAATCTAAAATCTGTGGTCTCATATTCTCAATATTTGTTAAAGTA
GCATGGCGATGTGACTCTATTTATAGAAGAGATCCAAAATGTTCTAGAAA
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m07.g1 MSMg01no543_m07.g1 CHROMAT_FILE:
MSMg01no543_m07.g1 PHD_FILE: MSMg01no543_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:14 2005
         (590 letters)



>mm_chr10_108439848_108440837
          Length = 990

 Score = 1094 bits (566), Expect = 0.0
 Identities = 584/590 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtaagcagtaaaatgcttcaatgactaagtacaggtaaaaaagtcagaatccaggaga 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtaagcagtaaaatgcttcaatggctaagtacaggtaaaaaagtcagaatccaggaga 260

                                                                       
Query: 61  aataaaaatggttcctatgtgctcaatatgtccttgatgacagaatctcaaaggcatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaaatggttcctatgtgctcaatatgtccttgatgacagaatctcaaaggcatggc 320

                                                                       
Query: 121 aggattcatctccctccttgttcctagagaagtcaagctctcttctaccatcaatattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggattcatctccctccttgttcctagagaagtcaagctctcttctaccatcaatattta 380

                                                                       
Query: 181 ttatgtgtttttgaggagttgctcagaaagtatctatgactccctagagggaaaaatcat 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgtgtttttgaggagttgctcagaaagtatctatgactccctagagggaaaaatcat 440

                                                                       
Query: 241 caagatgacataaaaaaaatttaaaccttaaaaaaaaaagtggtatagtttgggcttagg 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagatgacataaaaaaaaattaaaccttaaaaaaaaaagtggtatagtttgggcttagg 500

                                                                       
Query: 301 gatatgctggttttcttttaaaatgtcacattttgattgctagtcttagacatgtcttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatatgctggttttcttttaaaatgtcacattttgattgctagtcttagacatgtcttgt 560

                                                                       
Query: 361 agtgatttgcttgacttttaaattttaacatagtaatttaagcaagacatttaaaacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgatttgcttgacttttaaattttaacatagtaatttaagcaagacatttaaaacaga 620

                                                                       
Query: 421 tccctgcaagttatggcatgtgcgactcatacaatgcctgtatacagagaggaaacccac 480
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 tccctacaagttatggcatgtgcgactcatacaatgcctgtatacagagaggaaactcac 680

                                                                       
Query: 481 acgtttttatgcatacagcagtcctgcttacatgtacatacttttaatctaaaatctgtg 540
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgtttttatgcagacagcagtcctgcttacatgtacatacttttaatctaaaatctgtg 740

                                                             
Query: 541 gtctcatattctcaatatttgttaaagtagcatggcgatgtgactctatt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtctcatattctcaatatttgttaaagtagcatggcgatgtgactctatt 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)