BAC Information

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BAC

Clone NameMSMg01-544G14
Chromosome10 (Build37)
Map Location 6,939,760 - 6,940,201
singlet/doubletsinglet
Overlap genePpp1r14c
Upstream geneRmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
Downstream geneEG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544G14.T7 (MSMg01no544_g14.b1)MSMg01-544G14.TJ (MSMg01no544_g14.g1)
ACCAG609717AG609718
length739734
length of high quality
(start - end)
457 (74 - 530)529 (80 - 608)
definitionCHROMAT_FILE: MSMg01no544_g14.b1 PHD_FILE: MSMg01no544_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:04 2005CHROMAT_FILE: MSMg01no544_g14.g1 PHD_FILE: MSMg01no544_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTGGTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGCCTCTCACTGAGAAAATCCTAAGAAGGGTTTTGTCAT
GGAGAGATCATTTCTTGGGTTAAGGGGAAGGTGACAAAAGTAGAAGAAAA
TATTTGGGGAGAAAGAGATAAAAATATCTATCTTTTGTGAAGGTGAAGAA
AAGTAACCCTACAGCAGGAATTTGGCAAATATCTGGCTTAGAAAGCACAC
ACACACACACACACACACACATGCACAAAGGCCAAGTATGCAACTGTGTG
CAAGTCATCTCTAGCCTTTTCAAGTGCAGTGGGAATTACCTACACTAGCT
CATGCAGCCAATAGGGGTAACCCTCACAGTATGGCCAGGATCCAAGTCAT
GTGTGCACAACGAGTATGCAAAGATAAAATATACCAACCAAAATCTGCAT
CCACTCACAGCTCAGTCATGGAATTTCTCAGCTTTGTGAGGCTCTTATGG
AGAATATAGAGGAGACACTACATGAGACTGAAACAAACAAACCCAAAGCA
TCCATTCCCCCACACTCCCATGGTCAGTCTCCATGAGCCTGGTCACTTAA
GTTCCTCCACACATTTTTGTCCTTCTGTCTACACCTCTTTTCCTAGCTCA
GAGGCTACTATGAAGCCAAGAATCATTTCCTTCTTTGATACTTTAAAGGA
TGGGACTTGGCTCTACCGTTCCCGTAACTGTATAATATA
ATTCTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAAAGAATTTAATTTTTCT
TTATTTCTTCCTTGACCAAGCTGTCATTGAGTAGAGTATTGTTCAGCTTC
CATGTATATATGGGCTTTCTATTGTTTTGTTGTTACTAAAAAAGCAACCT
TAGTCCCTAGTGATCTGATAGAATGCATGGGATTATTTCAATCCTCTTGA
ATCTGTTGAGACCTGTTTTGGGCCCGATTATATGGTCAATTTTGGACAGG
GTACGGTGAGGTGCTGAGGAGAAGGTATATTCTTTTCTTTTAGTATGAAA
TATGCTATCTGTCAAATCCATTTGGTTCATAACTTCTGTTATTGTTTCCC
TGGTCTGTCTATTGTTGAGAATGTGAGGTTGAAGTCTTGCACTATTATTG
TATGAGGTACAATGTGTGCTTTGAGCTTTAGTAAAGTTTCTTTTATGAAT
GTGTGTGTCATTGCACCCACATTTGGAGTATAGATTGGAGCATTGAGAGT
TCTTCTTGGTAGATTTTTTTTTACTTGGATGGGTATGAAGTGTCCTTCCT
TATCTTTTTGATAACCTTTGTTTGAAAGTTGATTTTTATTTTGCTATTAG
AATAGCTACTCCAGCTTGTTTCTTGGGAGCATCTGCTTGGAAAATTGTTT
TCCAGCCTTTTGCTCTGAGGTAGTGTCTGCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_g14.b1 MSMg01no544_g14.b1 CHROMAT_FILE:
MSMg01no544_g14.b1 PHD_FILE: MSMg01no544_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:04 2005
         (457 letters)



>mm_chr10_6939558_6940413
          Length = 856

 Score =  787 bits (407), Expect = 0.0
 Identities = 437/453 (96%), Gaps = 11/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaaatcctaagaagggttttgtcatggagagatcatttcttgggttaaggggaaggtgac 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaatcctaagaagggttttgtcatggagagatcatttcttgggttaaggggaaggtgac 262

                                                                       
Query: 63  aaaagtagaagaaaatatttggggagaaagagataaaaatatctatcttttgtgaaggtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaagtagaagaaaatatttggggagaaagagataaaaatatctatcttttgtgaaggtg 322

                                                                       
Query: 123 aagaaaagtaaccctacagcaggaatttggcaaatatctggcttagaaagcacacacaca 182
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 323 aagaaaagtaaccctacagcaggaatttggcgaatatctg-cttagaaagcacacacaca 381

                                                                       
Query: 183 cacacacacacacacatgcacaaaggccaagtatgcaactgtgtgcaagtcatctctagc 242
           ||||||          ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 382 cacaca----------tgcacaaaggccaagtatgcaactgtgtgcaagtcatctctagt 431

                                                                       
Query: 243 cttttcaagtgcagtgggaattacctacactagctcatgcagccaataggggtaaccctc 302
           ||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||
Sbjct: 432 cttttcaagtgcagtgggaataacttacactagctcatgcagccaatagggggaaccctc 491

                                                                       
Query: 303 acagtatggccaggatccaagtcatgtgtgcacaacgagtatgcaaagataaaatatacc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 acagtatggccaggatccaagtcatgtgtgcacaacgagtatgcaaagataaaatatacc 551

                                                                       
Query: 363 aaccaaaatctgcatccactcacagctcagtcatggaatttctcagctttgtgaggctct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaccaaaatctgcatccactcacagctcagtcatggaatttctcagctttgtgaggctct 611

                                            
Query: 423 tatggagaatatagaggagacactacatgagac 455
           |||||||||||||||||||||||||||||||||
Sbjct: 612 tatggagaatatagaggagacactacatgagac 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 856
Length adjustment: 10
Effective length of query: 447
Effective length of database: 846
Effective search space:   378162
Effective search space used:   378162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)