Query= MSMg01no545_h20.b1 MSMg01no545_h20.b1 CHROMAT_FILE:
MSMg01no545_h20.b1 PHD_FILE: MSMg01no545_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:28 2005
(628 letters)
>mm_chr10_82037859_82038886
Length = 1028
Score = 1199 bits (620), Expect = 0.0
Identities = 624/626 (99%), Gaps = 2/626 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggacagccagggctatacatagaaagcctgtctcgaaaataaaaacaaaaac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggacagccagggctatacatagaaagcctgtctcgaaaataaaaacaaaaac 264
Query: 65 aaaaataaaaacaagtcattggtttagttttgaaagtagcccatgttcaaatgtaagaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaataaaaacaagtcattggtttagttttgaaagtagcccatgttcaaatgtaagaaa 324
Query: 125 aagtccttgctaataaatttcgtaagtgcatttgaaaatagttaatatttccacatggct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagtccttgctaataaatttcgtaagtgcatttgaaaatagttaatatttccacatggct 384
Query: 185 tcctttctactgtttttcttaaggtctctttattatatgtttgtagccaacttaatattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctttctactgtttttcttaaggtctctttattatatgtttgtagccaacttaatattt 444
Query: 245 ccacaggagataatgtaaaatagatgaatatcatgggagtaggtcattttatacggggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccacaggagataatgtaaaatagatgaatatcatgggagtaggtcattttatacggggta 504
Query: 305 ttaagtgaatgagattttaaatacattaacaataacatactgttgttggatacctgggtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttaagtgaatgagattttaaatacattaacaataacatactgttgttggatacctgggtc 564
Query: 365 tcagatgcagtgcatatcacttatgaattcaactaagctgggtacatatatagaaaataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagatgcagtgcatatcacttatgaattcaactaagctgggtacatatatagaaaataa 624
Query: 425 aaaactcaaagtttttaatctcataaatttgatttttcatatatatgtgtgtgt--atat 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 aaaactcaaagtttttaatctcataaatttgatttttcatatatatgtgtgtgtgtatat 684
Query: 483 atatgtatatagctatatacatatatatgcacatatatgtatatatatcccaatgagatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatgtatatagctatatacatatatatgcacatatatgtatatatatcccaatgagatc 744
Query: 543 gctatctttccacattattgatgcaaatgagaacactataagttcttgtagagctgatgg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gctatctttccacattattgatgcaaatgagaacactataagttcttgtagagctgatgg 804
Query: 603 tttatgacacaaaataatctaaactg 628
||||||||||||||||||||||||||
Sbjct: 805 tttatgacacaaaataatctaaactg 830
Score = 66.5 bits (34), Expect = 6e-15
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 474 tgtgtatatatatgtatatagctatatacatatatatgcaca 515
|||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 717 tgtgcatatatatgtatatagctatatacatatatatacaca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_h20.g1 MSMg01no545_h20.g1 CHROMAT_FILE:
MSMg01no545_h20.g1 PHD_FILE: MSMg01no545_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:28 2005
(617 letters)
>mm_chr10_82172308_82173324
Length = 1017
Score = 683 bits (353), Expect = 0.0
Identities = 359/361 (99%)
Strand = Plus / Minus
Query: 1 ttttcaagacatattttatttcattagtatggctgttttgcatgcatgtatgcatatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 ttttcaagacatattttatttcattagtatggctgttttgcatgcatgtatgcatatgca 948
Query: 61 tcacatgtgtgccttgtgcctgaggaagccggcagaggcatctgattccctgggactgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tcacatgtgtgccttgtgcctgaggaagccggcagaggcatctgattccctgggactgga 888
Query: 121 gttactactggatgtgaaccaccatgtggctgctgggaatctaaccacagagaggataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gttactactggatgtgaaccaccatgtggctgctgggaatctaaccacagagaggataaa 828
Query: 181 gcagcttgctgaaacctgctgatggccatgacacccatatgaggaaagtcacagagagga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 827 gcagcttgctgaaacctgctgatggccatgacacccatacgaggaaagtcacagagagga 768
Query: 241 agctaagtgagcatcagagacagtactgacaggtaacggtgtgcaggtgagcatcagaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agctaagtgagcatcagagacagtactgacaggtaacggtgtgcaggtgagcatcagaga 708
Query: 301 cagtactgacaggtaacggtgtgcgggtgagcatcagagacagtactgacaggtaacggt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 707 cagtactgacaggtaacggtgtgtgggtgagcatcagagacagtactgacaggtaacggt 648
Query: 361 g 361
|
Sbjct: 647 g 647
Score = 207 bits (107), Expect = 2e-57
Identities = 113/115 (98%)
Strand = Plus / Minus
Query: 487 gtgagcatcagagacagtactgacaggtaacggtgtgcgggtgagcatcagagacagtac 546
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 761 gtgagcatcagagacagtactgacaggtaacggtgtgcaggtgagcatcagagacagtac 702
Query: 547 tgacaggtaacggtgtgcgggtgagcatcagagacagtactgacaggtaacggtg 601
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgacaggtaacggtgtgtgggtgagcatcagagacagtactgacaggtaacggtg 647
Score = 199 bits (103), Expect = 4e-55
Identities = 112/115 (97%)
Strand = Plus / Minus
Query: 447 gtgagcatcagagacagtactgacaggtaacggtgttcgggtgagcatcagagacagtac 506
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 761 gtgagcatcagagacagtactgacaggtaacggtgtgcaggtgagcatcagagacagtac 702
Query: 507 tgacaggtaacggtgtgcgggtgagcatcagagacagtactgacaggtaacggtg 561
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgacaggtaacggtgtgtgggtgagcatcagagacagtactgacaggtaacggtg 647
Score = 161 bits (83), Expect = 2e-43
Identities = 89/91 (97%)
Strand = Plus / Minus
Query: 527 gtgagcatcagagacagtactgacaggtaacggtgtgcgggtgagcatcagagacagtac 586
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 761 gtgagcatcagagacagtactgacaggtaacggtgtgcaggtgagcatcagagacagtac 702
Query: 587 tgacaggtaacggtgtgcgggtgagcatcag 617
||||||||||||||||| |||||||||||||
Sbjct: 701 tgacaggtaacggtgtgtgggtgagcatcag 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 5
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
