Query= MSMg01no545_k24.b1 MSMg01no545_k24.b1 CHROMAT_FILE:
MSMg01no545_k24.b1 PHD_FILE: MSMg01no545_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:44 2005
(699 letters)
>mm_chr10_118179980_118181079
Length = 1100
Score = 1330 bits (688), Expect = 0.0
Identities = 694/696 (99%), Gaps = 1/696 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtggatcctaacccccttacgcaagggcctatgggctcatagaaggtgtcatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtggatcctaacccccttacgcaagggcctatgggctcatagaaggtgtcatt 264
Query: 65 atatgttcctgagttcgtttcctaatactctggtttcagagtttgtaggaagatgtcact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atatgttcctgagttcgtttcctaatactctggtttcagagtttgtaggaagatgtcact 324
Query: 125 tgaagtttctgatggttcgagtttccagagaacttgccaaatttcccctgcatttgcgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagtttctgatggttcgagtttccagagaacttgccaaatttcccctgcatttgcgtt 384
Query: 185 ccttttcttgtctacctggaagcttgttccttcaggcttcctcgggtgccctcgcttgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccttttcttgtctacctggaagcttgttccttcaggcttcctcgggtgccctcgcttgag 444
Query: 245 cccactctgattgtctgcatccccatctgtacttcacactcagctctctgagtgtgagtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccactctgattgtctgcatccccatctgtacttcacactcagctctctgagtgtgagtc 504
Query: 305 cgtgataacttgtgcaatatctaccatggtatttcttgggggcctatgtctaactttccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgtgataacttgtgcaatatctaccatggtatttcttgggggcctatgtctaactttccc 564
Query: 365 ctgtggcccaccacttagcatggtaccttgtggagggtaagtgctggtgtttgataagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgtggcccaccacttagcatggtaccttgtggagggtaagtgctggtgtttgataagca 624
Query: 425 gcactatccgatccaatgcgtaggggaagttaaagctcaaaaggagagtgcttccttcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcactatccgatccaatgcgtaggggaagttaaagctcaaaaggagagtgcttccttcct 684
Query: 485 tcaaaatcaaacctcaaattatccccaaagccatagcactgtgaatgttggaagagcagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaaaatcaaacctcaaattatccccaaagccatagcactgtgaatgttggaagagcagc 744
Query: 545 atggtcaagtttggaggtaagctttagagtttagatgtgccttcctcaagtgcctcttcc 604
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atggtccagtttggaggtaagctttagagtttagatgtgccttcctcaagtgcctcttcc 804
Query: 605 tgcctcagtttcctcttgttgatgagatctgagtgtggtaagctcatcagggtacacagt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgcctcagtttcctcttgttgatgagatctgagtgtggtaagctcatcagggtacacagt 864
Query: 665 gcatgtcgaggaaga-acaaactctgtctaccaccc 699
||||||||||||||| ||||||||||||||||||||
Sbjct: 865 gcatgtcgaggaagacacaaactctgtctaccaccc 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space: 751010
Effective search space used: 751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_k24.g1 MSMg01no545_k24.g1 CHROMAT_FILE:
MSMg01no545_k24.g1 PHD_FILE: MSMg01no545_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:44 2005
(660 letters)
>mm_chr10_118357036_118358095
Length = 1060
Score = 1096 bits (567), Expect = 0.0
Identities = 576/579 (99%)
Strand = Plus / Minus
Query: 1 ttctatataagcactttagtatttatttggttattgaaaaatagagattttaaagattcc 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttctatataagcactttcgtatttatttggttattgaaaaatagagattttaaagattcc 520
Query: 61 tgcttttagaagaactaaaataagcagtatttatatctgtgtttgcatatatcctatata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgcttttagaagaactaaaataagcagtatttatatctgtgtttgcatatatcctatata 460
Query: 121 tgtgttgtcagatcttttactaaaagttcatttatcactataaaggataagaaaagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtgttgtcagatcttttactaaaagttcatttatcactataaaggataagaaaagtcaa 400
Query: 181 aagatgaagttgtgttgtttggcttaaagcatgaagtattttctacgttttcaaaatatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aagatgaagttgtgttgtttggcttaaagcatgaagtattttctacgttttcaaaatatc 340
Query: 241 aacgatgcaatataaaacagagtttattggtttttggtcctctatggttgaaaaattata 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 339 aacgatgcaatataaaacagagtttattgttttttggtcctctatggttgaaaaattata 280
Query: 301 gttcaggaataaaagaaatattaaacaaggaccacatttttataatatatgatgaaggtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gttcaggaataaaagaaatattaaacaaggaccacatttttataatatatgatgaaggtc 220
Query: 361 caaatgccttcccacctccattaatacattgaagctctaacttgaatgtgctgctttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caaatgccttcccacctccattaatacattgaagctctaacttgaatgtgctgctttgag 160
Query: 421 atgggaccgaggatgcagagttagatgaggctcgaagagtgaaagctggggattgatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 atgggaccgaggatgcagagttagatgaggctcgaagagtgaaagctggggattgatgag 100
Query: 481 ctacaggtgcacctgtcggaagagacgaagaaacatcccatgtctgctgtgtgcgagcaa 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 99 ctacaggtgcacctgtcggaagagacgaagaagcatcccatgtctgctgtgtgcgagcaa 40
Query: 541 agagaaggcagctagatgcccacagccagagagcaaacc 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 agagaaggcagctagatgcccacagccagagagcaaacc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
