BAC Information

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BAC

Clone NameMSMg01-545M22
Chromosome10 (Build37)
Map Location 120,591,252 - 120,591,919
singlet/doubletsinglet
Overlap genenone
Upstream geneIrak3, Tmbim4, 1190005P17Rik, Hmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1
Downstream geneLOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545M22.T7 (MSMg01no545_m22.b1)MSMg01-545M22.TJ (MSMg01no545_m22.g1)
ACCAG610781AG610782
length739740
length of high quality
(start - end)
643 (37 - 679)618 (66 - 683)
definitionCHROMAT_FILE: MSMg01no545_m22.b1 PHD_FILE: MSMg01no545_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005CHROMAT_FILE: MSMg01no545_m22.g1 PHD_FILE: MSMg01no545_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCA
CAGTGGCTGCTTCTAATAGTTACTCCTCTTTCCCTGAGAGCTATCTTTAA
GCCTTTGATGAAGGCTGCCTCTTTAGTCAAAGTCCTCGAGAGGAGGGTAA
ATTGACTTAATTTTTTGTTCTTCATTTTTTATATTATCCTTTATATCTTT
ATATTATCCTTTGTATCTTTACATTTTATATTATCCTTTGTATCTTTATA
TTTTAGCTTCCTTTCTTTTTCTCTTTTTATATTTCTTAAGTTACTTATTT
TTCTGCGCACGTCTTCTTTTTCCTTTCTCTCTGTTTCTGATATGCCTTCC
TGGTACTCCTACAAAGTCGCTGCCCTTCCTTAACAGCTGGTCCCACACAA
ACCCAGCAACAATTACCAGACCCACTGCGTAAGAAAGCATACCTCTCAGA
GACTTACCTTAATTTCTTTATACTTACTGGTACCACCGTTCCTCAGCTGA
AGAGTTCTGAATCCACGCAGTTGAATCCTTCTCAGCAGTCTGTTTTGCAG
GAACCTTTATTAACACCGCTCCCCAGCTGAAGAGTTCTGAATCCACGCCG
GATCCTTCTCAGCAGTCTGTTTTACGGGAACCTTTATTAACCGCTCCTTC
CCCGCGATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTCGTG
CCTGAAGATGTTTCTTGGTCCGGGTTTTCGGCACCACTT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAGGGCTTTGTAGCAAGCTTTCGAGCTGGTTCAC
TGAAACACATGCACAGAGCATGATGAACTTCTTTTCAATTTCCTGCAGAG
ACTCGATCATCCCTTTCTCAAAAAGCAAAACTGGAATTGTAAGTCAATGT
TTGTACCATCAACCATGTGAGTAAATCTGCAGGTAAAGAAATGGAGAATT
TTCTGTAGGAGTTTGTTCCATCTGTGGGCCACTGAAAAATGTCTGTTGAA
TTGTTCAAATCCCTAATTTCTGCTTAATTTAGGCTCTCTCTCTCTCTCTG
GAAAAAAATATATCATTGCCTTTGATTCTTAAAGATAATGTCTACCAAAT
GGCTGAGAAGCACTTAAAAAAACTGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCAAACCAGTCAGAATGGC
TAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGGGAGAAAA
AAGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAATCACTCT
GGAAAGCAGTTTGGTGGTTCCTCAGAAAGTTGAACATAGTTCTACCAGAA
GATCCAGCAATATCTCTCCTGGGCATATATCCAGAAGATGCTCCAACTTG
TAATAAGGACACATGCTCCACTATGTTCATAACAGCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_m22.g1 MSMg01no545_m22.g1 CHROMAT_FILE:
MSMg01no545_m22.g1 PHD_FILE: MSMg01no545_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:53 2005
         (618 letters)



>mm_chr10_120591052_120592069
          Length = 1018

 Score = 1019 bits (527), Expect = 0.0
 Identities = 607/669 (90%), Gaps = 56/669 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagggctttgtagcaagctttcgagctggttcactgaaacacatgcacagagcatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caagggctttgtagcaagctttcgagctggttcactgaaacacatgcacagggcatgatg 260

                                                                       
Query: 61  aacttcttttcaatttcctgcagagactcgatcatccctttctcaaaaagcaaaactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacttcttttcaatttcctgcagagactcgatcatccctttctcaaaaagcaaaactgga 320

                                                                       
Query: 121 attgtaagtcaatgtttgtaccatcaaccatgtgagtaaatctgcaggtaaagaaatgga 180
           ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 321 attgtaagtcaatgtttgtaccatcaaacatgtgagcaaatctgcaggtaaagaaatgga 380

                                                                       
Query: 181 gaattttctgtaggagtttgttccatctgtgggccactgaaaaatgtctgttgaattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttctgtaggagtttgttccatctgtgggccactgaaaaatgtctgttgaattgtt 440

                                                                       
Query: 241 caaatccctaatttctgcttaatttaggctctctctctctctct---------------- 284
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 441 caaatccctaatttctgcttaatttaggctctctctctctctctctctctctctctctct 500

                                                                       
Query: 285 --------------------------------------ggaaaaaaatatatcattgcct 306
                                                 |||||||| |||||||||||||
Sbjct: 501 ctctctctctctctctctctctctctctctctctctctggaaaaaa-tatatcattgcct 559

                                                                       
Query: 307 ttgattcttaaagataatgtctaccaaatggctgagaagcacttaaaaaaa-ctgttcaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 ttgattcttaaagataatgtctaccaaatggctgagaagcacttaaaaaaaactgttcaa 619

                                                                       
Query: 366 catccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctcaaaccag 425
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 catccttaatcatcagggaaatgcaaatcagaacaaccctgagattccacctcaaaccag 679

                                                                       
Query: 426 tcagaatggctaagatcaaaaactcaggtgacagcagatgctggcgaggatgggagaaaa 485
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 680 tcagaatggctaagatcaaaaactcaggtgacagcagatgctgtcgaggatgggagaaaa 739

                                                                       
Query: 486 aagaacactcctccattgttggtgggattgcaagcttgtacaatcactctggaaagcagt 545
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 740 aagaacactcctccattgttggtgggattgcaagcttgtacaaccactctggaaagcagt 799

                                                                       
Query: 546 ttggtggttcctcagaaagttgaacatagttctaccagaagatccagcaatatctctcct 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttggtggttcctcagaaagttgaacatagttctaccagaagatccagcaatatctctcct 859

                    
Query: 606 gggcatata 614
           |||||||||
Sbjct: 860 gggcatata 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)