Query= MSMg01no545_p03.b1 MSMg01no545_p03.b1 CHROMAT_FILE:
MSMg01no545_p03.b1 PHD_FILE: MSMg01no545_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:04 2005
(632 letters)
>mm_chr10_13634233_13635264
Length = 1032
Score = 302 bits (156), Expect = 6e-86
Identities = 177/186 (95%), Gaps = 4/186 (2%)
Strand = Plus / Minus
Query: 5 gaattcatcaagaaaatcatttaattggatgttcattgtgtgtcttccagaagcttagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaattcatcaagaaaatcatttaattggatgttcattgtgtgtcttccagaagcttagtc 265
Query: 65 taagttatagactctgggtatctaccatgtcaccatatctgctttgtacatgtttatgtg 124
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 taagttatagactctgggcatctaccatgccaccatatctgctttgtacatgtttatgtg 205
Query: 125 tgtgtgcgcgcacacacacacacacacatacacacacacacacacacacagtctatctgt 184
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 cacgtgcgcgcacacacacacacac----acacacacacacacacacacagtctatctgt 149
Query: 185 ttatct 190
||||||
Sbjct: 148 ttatct 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_p03.g1 MSMg01no545_p03.g1 CHROMAT_FILE:
MSMg01no545_p03.g1 PHD_FILE: MSMg01no545_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:04 2005
(576 letters)
>mm_chr10_13490019_13490990
Length = 972
Score = 1060 bits (548), Expect = 0.0
Identities = 568/578 (98%), Gaps = 8/578 (1%)
Strand = Plus / Plus
Query: 1 tttgctgttggctgcaagtcctcatgaaggccctggagtgttgtaacagtacattaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctgttggctgcaagtcctcatgaaggccctggagtgttgtaacagtacattaatgc 260
Query: 61 aatattacattaatcaatgacaccacagacacacactcttctaaacgaaaacaactgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatattacattaatcaatgacaccacagacacacactcttctaaacgaaaacaactgtag 320
Query: 121 gaattcacatctgtgttgcatgggcaagtgtgatcctgatttggc--aaaaaaaaaaaaa 178
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gaattcacatctgtgttgcatgggcaagtgtgatcctgatttggcaaaaaaaaaaaaaaa 380
Query: 179 aaagtcacattcattctacattcagctgttctgaaacaaatccaatgtgtatatatatgt 238
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaagtca----cattctacattcagctgttctgaaacaaatccaatgtg--tatatatgt 434
Query: 239 atcagctacagaaacactgtgcaaaggtaatgtatttatgcatccctcatctaccgcagg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atcagctacagaaacactgtgcaaaggtaatgtatttatgcatccctcatctaccgcagg 494
Query: 299 aatgcataacatggaaataataagctgcagagattcaaacagacattcctttcaaattaa 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 495 aatgcataacatggaaataataagctgcagagattcagacagacattcctttcaaattaa 554
Query: 359 ttagcaaacctctaaaagatctttatcaaagggttgcaaacaaagctccaagagtcccct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttagcaaacctctaaaagatctttatcaaagggttgcaaacaaagctccaagagtcccct 614
Query: 419 caactgagcagcaatatgacagttggccatcagggcagctttgaattccttccaggcagt 478
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 615 caactgagcagcaatatgacagttggccatcagggcaactttgaattccttccaggcagt 674
Query: 479 cacctgcatgtggttgatttttgggttcaggggaggacagcaaggagttatctggataat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cacctgcatgtggttgatttttgggttcaggggaggacagcaaggagttatctggataat 734
Query: 539 ttgttgaaagcagatttcatgttttactaccgcagcct 576
||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttgttgaaagcagatttcatgttttactaccgcagcct 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 972
Length adjustment: 10
Effective length of query: 566
Effective length of database: 962
Effective search space: 544492
Effective search space used: 544492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
