Query= MSMg01no546_d19.b1 MSMg01no546_d19.b1 CHROMAT_FILE:
MSMg01no546_d19.b1 PHD_FILE: MSMg01no546_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:27 2005
(454 letters)
>mm_chr10_49927730_49928583
Length = 854
Score = 514 bits (266), Expect = e-150
Identities = 278/282 (98%)
Strand = Plus / Plus
Query: 160 agtgttcattcttatagttacccgtcaactgtgtcactctgtttcttcatgttggtttct 219
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 360 agtgttcattcttatagttacctgtcaactgtgtcactctgtttcttcatgttggtttct 419
Query: 220 ctattttcactgcatactgtgcatctcaagaaccagtacagtaattagacctactacatg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctattttcactgcatactgtgcatctcaagaaccagtacagtaattagacctactacatg 479
Query: 280 ttttgatacagactcagtagtatttataaattggagataccaatgtaatatccataccca 339
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 480 ttttgatacagactcagtagtatttataaattggagataccaatggaacatccataccca 539
Query: 340 ggggtggcaagatagctcagtagatgaaggctcttaccaccaaatcagagaaccttagtt 399
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggggtggcgagatagctcagtagatgaaggctcttaccaccaaatcagagaaccttagtt 599
Query: 400 ccatttcaggattgcttatgaattgtcatctaacttctacct 441
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ccatttcaggattgcttatgaattgtcatctaacttctacct 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_d19.g1 MSMg01no546_d19.g1 CHROMAT_FILE:
MSMg01no546_d19.g1 PHD_FILE: MSMg01no546_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:28 2005
(552 letters)
>mm_chr10_50046007_50046959
Length = 953
Score = 965 bits (499), Expect = 0.0
Identities = 525/541 (97%), Gaps = 14/541 (2%)
Strand = Plus / Minus
Query: 13 acacacacacacacacacacacatatatatatatatatatatatatatatatatatatat 72
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 acacacacacacacacacacac------------atatatatatatatatatatatatat 612
Query: 73 atatatatatatgaaagtatactaagaatgtcctcagagacaaatgtgattattgagaaa 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 atatatatatatgaaagtatactaagaatgtcctcagagacaaatgtgattattgagaaa 552
Query: 133 aaaa-tctatgagaaaaatatctatctctgattcattaaattattttgatttcttggcct 191
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 551 aaaaatctatgagaaaaatatctatctctgattcattaaattattttgatttcttggctt 492
Query: 192 tttagccattatattttgtgagattaaaagtcaaaaatctcaagtatattcttagaccac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tttagccattatattttgtgagattaaaagtcaaaaatctcaagtatattcttagaccac 432
Query: 252 aagtcagtaagccatagggcaatataataattttatgcggttaagtcataatcttatcaa 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aagtcagtaagccatagggcaatataataattttatgcggttaagtcataatcttatcaa 372
Query: 312 gaaatttgttagggccattaattatctcagaaaatactgaggtatattacaaaaggtttt 371
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 371 gaaatttgttagggccattaattatctcaaaaaatactgaggtatattacaaaaggtttt 312
Query: 372 gtttgtgtgtttgtttttaaatgctactgcaatagatgggcttgaaaattggactaattt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtttgtgtgtttgtttttaaatgctactgcaatagatgggcttgaaaattggactaattt 252
Query: 432 tcccattcctttccgtagccacacctttgcaatttcacttttcaggaaaggtaatttctc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcccattcctttccgtagccacacctttgcaatttcacttttcaggaaaggtaatttctc 192
Query: 492 caccccttgagtctgcactctccttagagagtttcctatgtggtactattatcttctgag 551
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 191 caccccttgagtctgcactctccttagagagtttcctatgtggtactattatct-ctgag 133
Query: 552 c 552
|
Sbjct: 132 c 132
Score = 76.1 bits (39), Expect = 6e-18
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 34 catatatatatatatatatatatatatatatatatatat 72
|||||||||||||||||||||||||||||||||||||||
Sbjct: 599 catatatatatatatatatatatatatatatatatatat 637
Score = 76.1 bits (39), Expect = 6e-18
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 47 atatatatatatatatatatatatatatatatatatatg 85
|||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatatg 638
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 37 atatatatatatatatatatatatatatatatatatat 74
||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatat 637
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 39 atatatatatatatatatatatatatatatatatatat 76
||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatat 637
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 41 atatatatatatatatatatatatatatatatatatat 78
||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatat 637
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 43 atatatatatatatatatatatatatatatatatatat 80
||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatat 637
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 45 atatatatatatatatatatatatatatatatatatat 82
||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatatatatatatatatatatatatatatatatatat 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 10
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
