BAC Information

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BAC

Clone NameMSMg01-546E06
Chromosome10 (Build37)
Map Location 104,317,427 - 104,317,701
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546E06.T7 (MSMg01no546_e06.b1)MSMg01-546E06.TJ (MSMg01no546_e06.g1)
ACCAG611131AG611132
length1,100783
length of high quality
(start - end)		---263 (72 - 334)
definitionCHROMAT_FILE: MSMg01no546_e06.b1 PHD_FILE: MSMg01no546_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:30 2005CHROMAT_FILE: MSMg01no546_e06.g1 PHD_FILE: MSMg01no546_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGGCGCCCGCGTTCTAATGCTCTCCGCACCTCCCGATGCTGAGAACTAG
CGCAGATAGAACCTATGTGCCGCTCGGAATGAGGAGGGAGTATATAGGGG
ACGACACCTAATCCGGCGCATGACACAGCGCGGATCATGCGATCTATAAT
TTTGTCCGGCCCACGTTCTCTCTTTCTTGTTCGGCCGGCACCGGTCTCTC
GCAGCTTATCGACGTTATGTGTCGTGGTCGGAAAATGACGGCGCTGGGGC
GATACCTACATTACCCTCTCAACACGTATTTTTCGTTATCTGTCCCTTGC
CCTATGGCTCACATCGCCTCATTTGTATGATTCGCCCTCGGCCGTATCTC
TACGTGGATACGGTACATCGGAGCAGAATGAGCCAACAACCCGCCTGCGC
CGCACGTTTGGCTCCTCCGTGTTCCTACAGATCGCGGCTTGTCTCCTTCT
ATTCGCTCACCCGCAACGCTCCTAGATAGCTACGCCACTAACATATAACT
ATATATAGTTACACTAGATCATGGATCGGGTGTAGCTGATGTTGCCATCG
CGTCTTTATCAACCGCCCCTTATGTGTCTCTCGCCCTTGTGTGTAACCCA
CAAACTACCCGTGTGTATAGAAAGTTATATCCGGCCGTAGGTATTGGTAC
GAAAAACTACCACGGCTCACTGTTATATGCGCGCATCTTAGCCCGCCGCT
CACCCCGCTTGTAAGGTAGCAGGCGCTGTCTAGCGTTACGATCCCTCTAT
GTATGCCGACGATTGTAGTAGGCGTCCACTCACAAAGACTAACACAGAAT
CCATTATCACACTTGCCCCCTTTTGTTCACCCTTCTCGCCCCTATCCCTT
TCACCTGTTACACTCCTGTGCGACCTAGTATGTCGGATCTCGTTGATGAC
GTTAGGATTTTATATACTTCGTGATTATTATTTCAGGTCGCGCTATTCGT
GTAGCGTTCACACCCCCGGTTATCCTTATACACGCTCCAGTATAATACCT
CGCGTGTATGCTAATTTACTACTGATGTATACCCCGTACATAATTGATCT
GCAACATTAGTCTCTCCACGTGTTCGGCTCCACCACTTCGCGCCACTTCG


TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCATTTTAGTTTATAGTCTTCTCAGTC
TGTGAGGTATGGAGCAATGCTATTTGCAATTCAGAAGTAAAAAAAAAAAA
CAGGTACAAATGGTTTACATGGATTTTCCTTTATCAATTAGTAGAAAGAA
ACAGATCTGAAATGTAAGTCTGAATATAGCCTAAATGTTAAATTTTTAAT
ATTTACTTTTTAGGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGA
GAGAGAGTGTGTGTGGGCATATGTGTGCATATGTATGTATTATGTATAGA
TATATGTATGCTTATGCATATACAATGGATATATAGGGGTGTGTGTATTT
TCTCAAAAAAAATATACATACCTTTTATTCCTATTTATATATTTAGGTCA
AAGGATTAATTTTAACTTAGGTAATTATATTTTACTCTACCATTAGATCT
AATCCTCCTGGCCCATAAACCTTTCACATTCCTATTTATTGTTTTATTGG
AATGGGGCGAGGGGTTTTTTTTTTTTTAGCTTCATTTTCTATCTACTTTT
ATTAGTGGGCCCAGTCTCTTTTTTGAGGAATTTTTTTAAACTCCTTTCCA
TCTCTTTATTTTCCCTCGCTTTAATTTTTTTCTCGGGATATATAGCGAGT
TAACTTTTTACTCCCTTTCAATCTCCGCTCTTTTTCTACCATTATTTGCC
GTCACTTTTCCCCCCTTGCCTCTATTATTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_e06.g1 MSMg01no546_e06.g1 CHROMAT_FILE:
MSMg01no546_e06.g1 PHD_FILE: MSMg01no546_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:30 2005
         (263 letters)



>mm_chr10_104317311_104317969
          Length = 659

 Score =  385 bits (199), Expect = e-111
 Identities = 251/279 (89%), Gaps = 20/279 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcattttagtttatagtcttctcagtctgtgaggtatggagcaatgctatttgcaatt 60
           |||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||
Sbjct: 391 actcattttagtttatagtcttctcaatctgtgaggtgcggagcaatgctatttgcaatt 332

                                                                       
Query: 61  cagaagtaaaaaaaaaaaacaggtacaaatggtttacatggattttcctttatcaattag 120
           ||||| |    |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 331 cagaatt----aaaaaaaacaggtacaaatggtttacatagattttcctttatcaattag 276

                                                                       
Query: 121 tagaaagaaacagatctgaaatgtaagtctgaatatagcctaaatgttaaatttttaata 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tagaaagaaacaaatctgaaatgtaagtctgaatatagcctaaatgttaaatttttaata 216

                                                                       
Query: 181 tttactttttagggagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagag---- 236
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
Sbjct: 215 tttactttttagggagtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagag 156

                                                  
Query: 237 ---------t-gt--gtgtgggcatatgtgtgcatatgt 263
                    | ||  ||||||||||||||||||||||||
Sbjct: 155 agagagagatagtatgtgtgggcatatgtgtgcatatgt 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 659
Length adjustment: 9
Effective length of query: 254
Effective length of database: 650
Effective search space:   165100
Effective search space used:   165100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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