Query= MSMg01no546_g18.b1 MSMg01no546_g18.b1 CHROMAT_FILE:
MSMg01no546_g18.b1 PHD_FILE: MSMg01no546_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(482 letters)
>mm_chr10_88249597_88250478
Length = 882
Score = 893 bits (462), Expect = 0.0
Identities = 474/478 (99%)
Strand = Plus / Plus
Query: 5 gaattcctgtgcttgttttaaatgttaactgatgcttgcaatgttatgttaaagtaaggg 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtgcttgttttaaatgttaactgttgcttgcaatgttatgttaaagtaaggg 264
Query: 65 ctcaacacatctagtcatggcaaatcctcactatgacaatgtcacacgctatgacaggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaacacatctagtcatggcaaatcctcactatgacaatgtcacacgctatgacaggag 324
Query: 125 acagccagagcttagcctgcaccatcacacacacttcactgctttccaactgagctgagg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 acagccagagcttagcctgcaccatcacacacacttcactgctttccaactgagatgagg 384
Query: 185 atctgggactcgggaggtaaagacaagtcactgctcacaggcaaatgattctgtggcgga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctgggactcgggaggtaaagacaagtcactgctcacaggcaaatgattctgtggcgga 444
Query: 245 gcacatgactaaatggctaaagacttagagagagattaagctcaggttagatcacggggg 304
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 acacatgactaaatggctaaagacttacagagagattaagctcaggttagatcacggggg 504
Query: 305 tgggggaagcagcagccccagtacaaagacttctatccaggaacggcacaagttcacagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggggaagcagcagccccagtacaaagacttctatccaggaacggcacaagttcacagc 564
Query: 365 aaaggcgtgcgttcggcaagggaggcagcagggacctaccgtccttgaagtgcttcactg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaggcgtgcgttcggcaagggaggcagcagggacctaccgtccttgaagtgcttcactg 624
Query: 425 gttcagacagcaggtctaagaataactggatctcttcaggttgggtccctgcgaggaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttcagacagcaggtctaagaataactggatctcttcaggttgggtccctgcgaggaa 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_g18.g1 MSMg01no546_g18.g1 CHROMAT_FILE:
MSMg01no546_g18.g1 PHD_FILE: MSMg01no546_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:43 2005
(548 letters)
>mm_chr10_88424999_88425946
Length = 948
Score = 837 bits (433), Expect = 0.0
Identities = 478/517 (92%), Gaps = 38/517 (7%)
Strand = Plus / Minus
Query: 68 cttatttgggaatgctttcagaagcatctacttgtcctttagagaaacttccttcataat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 cttatttgggaatgctttcagaagcatctacttgtcctttagagaaacttccttcataat 889
Query: 128 aataagagaacttcctttgtctgctactctcattatttttctcttatcatcaggatagct 187
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 888 aataagagaacttcctttgtctgctactctcatcatttttctcttatcatcaggatagct 829
Query: 188 tcatcttcatat------------------------------------agtctctctctc 211
|||||||||||| ||||||||||
Sbjct: 828 tcatcttcatattctctctctctctctctctctctctctctctctctc--tctctctctc 771
Query: 212 tctctctctctctctctctctcaaaatggtagtgggtattcagagcatatcccagcaaac 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tctctctctctctctctctctcaaaatggtagtgggtattcagagcatatcccagcaaac 711
Query: 272 caagtaagcataacatcagcctgccctttatggtcctccaactgtgacaaatggacagac 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 caagtaagcataacatcagcctgccctttatggtcctccaactgtgacaaatggacagac 651
Query: 332 atcactggctgcactgtggctaaaccaaagtatgaaattccaaatctctacatttatagc 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atcactggctgcactgtggctaaaccaaagtatgaaattccaaatctctacatttatagc 591
Query: 392 agactcaactttctaatatggcaatgatgggcttctacccttgtaaaaagaatcagggaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agactcaactttctaatatggcaatgatgggcttctacccttgtaaaaagaatcagggaa 531
Query: 452 acagttcagtatcagtggcccttctcctgtgacgattgagatgttatagaaagaagatga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 acagttcagtatcagtggcccttctcctgtgacgattgagatgttatagaaagaagatga 471
Query: 512 caatatgcttgtatactaggtccacatttaattctat 548
|||||||||||||||||||||||||||||||||||||
Sbjct: 470 caatatgcttgtatactaggtccacatttaattctat 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
