BAC Information

Click to search

BAC

Clone NameMSMg01-547B13
Chromosome10 (Build37)
Map Location 78,498,573 - 78,499,248
singlet/doubletsinglet
Overlap genenone
Upstream geneAire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
Downstream gene2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547B13.T7 (MSMg01no547_b13.b1)MSMg01-547B13.TJ (MSMg01no547_b13.g1)
ACCAG611765AG611766
length755766
length of high quality
(start - end)		657 (34 - 690)633 (63 - 695)
definitionCHROMAT_FILE: MSMg01no547_b13.b1 PHD_FILE: MSMg01no547_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005CHROMAT_FILE: MSMg01no547_b13.g1 PHD_FILE: MSMg01no547_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCACT
TATCTCCTACAATTGTGCTGTCTTTTATATCACTATGATGGTTTGTATAT
GCTTGGCCCAGGGAGTTGCACTATTAGAAGGTATGGTCCTATTTGAGTCA
GTATGGCCATGTTGCAGTACGTGTGTCACTGTGGGTGTGTGCTTTACACC
CTTATCCTAGCTGCCTGGAAGCCAGTATTCTGCTAGCAGCCTTCAGATGA
AGATGTAGAACTCTCAACACCTCCTTAATCATGCCTACTTGGATGCTGCC
ATGTTCCCACCTTGGTGATAATGGACTGAACCTCTGAACCTATAAGCCAG
CCCCAATTAAATGTTATCATTATAAGACTTCCCTTGGTCATGGTGTCTGT
TCACAGCAAAAAAAAAAAAAAAAAAAACCCAAAAAACCAAAACCAAAACC
AAAACCAAAACAAAACCAAAAACAAAAAACCCTAAGACAATCACTTTTCT
TATACAAGTCAAGTTCTTCCCCTTGAATTCTTTTTGTTATCTGTAATCCA
CTGGCATTTCCTACTTTCTCCACATATTCCCATCCTTGGATCAGAAAGTT
CTGATAATCGCTGCTTCATTTAGAGAATGACAGAGACTTCAGGAAAATGA
TTTATTTTGGAAAGTGTATGTGGAGATTGTTTTCTTCACTAAGGAAATAT
TCTCTTTTATATTAGCTATTTTATTTATTTACATTTTAAATGTTGTCCCC
CATAC

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGATCCCACAATGCCTACAATGACTAAGAAGGTGAAT
CATTCCTATGTGTTATTTTAATAGAACATACAGGTAAAAGATTCAGTTGT
TAAACTGAAGTAACGTAATGGTCATGTGGTTCCCTTGTCTCATTTTTTTC
CTTTACTTAGTTTTGTGAGAGCACTGTAGAAAGAATGGAAAATCCTCTGA
GAAACTTGTCCTTCACCTGTTTCATTGGAAATCTCATTGTCTGGGCAAGG
AGTGCAGTCAAAGCAACAGGTAGGCTTGCTCTCCAGGACAACTTTCCTGA
ATCCAGGATTGCAGCTCTCACTGCATACAGACTGAGGAGTCTGAAAAATA
TTAAATACAAGATACAAAACACTTAGCTCTTAATTAGTGCACAAGTAAAG
TATGTATTTTATAATACAGAAAGTATATTAATTAAAATTTATACCTAAAT
ATGTTGGTTTTTGCTGTTTTACTCCATTGGCCATTGAATGAAAGTGGAAA
TGACCTTTGGTCAGCAACGGCCATCACTTTCCTTTCCTGAATTTAATGAA
ATCTGCCCAGTGTCCTAAAATTAGCCCCGTCATAATCCTCTGCCTTAGGG
AACTTCACCCTCAAACTGTGATGTTACAAATAAAATTTTTCTATCCTCAT
ATTAATTTTGTTGCCTACATGTTTCCAACAATACAGGTAAGTATAAATGG
GAAATACTCACTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_b13.b1 MSMg01no547_b13.b1 CHROMAT_FILE:
MSMg01no547_b13.b1 PHD_FILE: MSMg01no547_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:37 2005
         (657 letters)



>mm_chr10_78498392_78499448
          Length = 1057

 Score = 1154 bits (597), Expect = 0.0
 Identities = 647/677 (95%), Gaps = 25/677 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcacttatctcctacaattgtgctgtcttttatatcactatgatggtttgta 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattcagtcacttatctcttacaattgtgctgtcttttatatcactatgatggtttgta 241

                                                                       
Query: 65  tatgcttggcccagggagttgcactattagaaggtatggtcctatttgagtcagtatggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tatgcttggcccagggagttgcactattagaaggtatggtcctatttgagtcagtatggc 301

                                                                       
Query: 125 catgttgcagtacgtgtgtcactgtgggtgtgtgctttacacccttatcctagctgcctg 184
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 302 catgttgaagtacgtgtgtcactgtgggtttgtgctttacacccttatcctagctgcctg 361

                                                                       
Query: 185 gaagccagtattctgctagcagccttcagatgaagatgtagaactctcaacacctcctta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gaagccagtattctgctagcagccttcagatgaagatgtagaactctcaacacctcctta 421

                                                                       
Query: 245 atcatgcctacttggatgctgccatgttcccaccttggtgataatggactgaacctctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atcatgcctacttggatgctgccatgttcccaccttggtgataatggactgaacctctga 481

                                                                       
Query: 305 acctataagccagccccaattaaatgttatcattataagacttcccttggtcatggtgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acctataagccagccccaattaaatgttatcattataagacttcccttggtcatggtgtc 541

                                                                       
Query: 365 tgttcacagcaaaaaaaaaaaaaaaaaaaa-------------cccaaaaaaccaaaac- 410
           ||||||||||||||||||||||||||||||             || ||||||| ||||| 
Sbjct: 542 tgttcacagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaacaaaaaca 601

                                                                       
Query: 411 ----caaaaccaaaa-c-----caaaacaaaaccaaaaacaaaaaaccctaagacaatca 460
               ||||||||||| |     |||||||||||||||| |||||||||||||||||||||
Sbjct: 602 aaaacaaaaccaaaaacaaaaacaaaacaaaaccaaaa-caaaaaaccctaagacaatca 660

                                                                       
Query: 461 cttttcttatacaagtcaagttcttccccttgaattctttttgttatctgtaatccactg 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cttttcttatacaagtcaagttcttccccttgaattctttttgttatctgtaatccactg 720

                                                                       
Query: 521 gcatttcctactttctccacatattcccatccttggatcagaaagttctgataatcgctg 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gcatttcctactttctccacatattcccatccttggatcagaaagttctgataatcgctg 780

                                                                       
Query: 581 cttcatttagagaatgacagagacttcaggaaaatgatttattttggaaagtgtatgtgg 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cttcatttagagaatgacagagacttcaggaaaatgatttattttggaaagtgtatgtgg 840

                            
Query: 641 agattgttttcttcact 657
           |||||||||||||||||
Sbjct: 841 agattgttttcttcact 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |