Query= MSMg01no547_h16.b1 MSMg01no547_h16.b1 CHROMAT_FILE:
MSMg01no547_h16.b1 PHD_FILE: MSMg01no547_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:07 2005
(672 letters)
>mm_chr10_59133065_59134136
Length = 1072
Score = 1162 bits (601), Expect = 0.0
Identities = 649/671 (96%), Gaps = 13/671 (1%)
Strand = Plus / Minus
Query: 4 ggaattcctcgtagttgtgcctagaaacccatctcccaggtgattctagaatctctcaag 63
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ggaatccctcgtagttgtgcctagaaacccatctcccaggtgattctagaatctctcaag 815
Query: 64 tttttttgtagctagcctgggctgtatagttcaaagctgggagttcaacgtaaagtgaga 123
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 814 tttttttgtagctagcctgggctgtatagttcaaagctgggagttcgaggtaaagtgaga 755
Query: 124 tcctttctccaaaaataaaacaaaagtgcaagaaaacaatacatcccatttgatctacat 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 754 tcctttctccaaaaataaaacaaaagtgcaagtaaacaatacatcccatttgatctacat 695
Query: 184 atataaaagcctagaaaatgcatcctgatctgtaatgattgaaagtagatcattgattcg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atataaaagcctagaaaatgcatcctgatctgtaatgattgaaagtagatcattgattcg 635
Query: 244 ctggggttatgaatagatgaagtgtttatgaatagtttatgaagtggtacaaagaaactt 303
||||||||||||||||||| | | | ||||||||||||||||||||||||||
Sbjct: 634 ctggggttatgaatagatg----g---acg----gtttatgaagtggtacaaagaaactt 586
Query: 304 ttggaacacatgggaatgttatgttaactatagatacttgtgtcaaaaccgatctgttta 363
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttggaacagatgggaatgttatgttaactatagatacttgtgtcaaaaccgatctgttta 526
Query: 364 cagactttaaatgcatacagtccaatgcatcaataaagccatcaaaaaggctggggattt 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 525 cagactttaaatgcatacagtccaatgcatcaataaagccatcaaaaaggctggggatat 466
Query: 424 tcttggtagtggcaagcttactggtatagcaggcacaaggccctgggttaaatccttgtc 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcttggtagtggcatgcttactggtatagcaggcacaaggccctgggttaaatccttgtc 406
Query: 484 attttaggcagagaaaggaagggtgggactacagggggaagagagaaaaaggacagctga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 attttaggcagagaaaggaagggtgggactacagggggaagagagaaaaaggacagctga 346
Query: 544 ggtggaacacaattaaagac--aaaaaaaaaagtacagatgtcttaatttcctttagagt 601
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ggtggaacacaattaaagacaaaaaaaaaaaagtacagatgtcttaatttcctttagagt 286
Query: 602 gattcttttaaaaagctggccatgttttctataacccacttaattaggtcagttttatga 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 285 gattcttttaaaaagctggccatgttttctataacccacttaattaggccagttttatga 226
Query: 662 ttttctctgtt 672
|||||||||||
Sbjct: 225 ttttctctgtt 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_h16.g1 MSMg01no547_h16.g1 CHROMAT_FILE:
MSMg01no547_h16.g1 PHD_FILE: MSMg01no547_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:07 2005
(660 letters)
>mm_chr10_58997274_58998333
Length = 1060
Score = 1127 bits (583), Expect = 0.0
Identities = 649/695 (93%), Gaps = 37/695 (5%)
Strand = Plus / Plus
Query: 1 ctttaaaaaggacttactttccttggaaaaggctaacagtcactggatacaggtcaggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctttaaaaaggacttactttccttggaaaaggctaacagtcactggatacaggtcaggag 223
Query: 61 ttatcttttcctcctacctatgttgctgaattttgcaatatgaaagtccaacaatagaca 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 224 ttatcttttcctcctacctatgttgatgaattttgcaatatgaaagtccaacaatagaca 283
Query: 121 tacgaacacaagagttcagaattaagaacttcgtggtacatgttaagtggtctatggtgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 284 tacgaacacaagagttcagaattaagaacttcgtggtacatgttaagtggtctatgatgt 343
Query: 181 gcatgtgcatggaatggattcccatgaggtccgtggcactggggcactttcaaagaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 344 gcatgtgcatggaatggattcccatgaggtccgtggcactggggcactttcaaagcggag 403
Query: 241 ctaaagccagaagatctacattacatgtgcaaacaaagatggctggtgggcgtctggtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ctaaagccagaagatctacattacatgtgcaaacaaagatggctggtgggcgtctggtgg 463
Query: 301 gccatgg-------------------------------------gtgaaaaagagaagta 323
||||||| ||||||||||||||||
Sbjct: 464 gccatggatgaaaagatggctggtgggcgtctggtgggccatgggtgaaaaagagaagta 523
Query: 324 gacagtctcccagatctctgtccaccctggatgtccttcccgggtccttcccagtagcct 383
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ggcagtctcccagatctctgtccaccctggatgtccttcccgggtccttcccagtagcct 583
Query: 384 aggctacatttgcacagttagttactttacttactcagtgtggtccaatctgaaatcatg 443
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggttacatttgcacagttagttactttacttactcagtgtggtccaatctgaaatcatg 643
Query: 444 gtcaaagaggtcaataattttcctgctatgattagaaatgaaaaaaatctaacttcagaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gtcaaagaggtcaataattttcctgctatgattagaaatgaaaaaaatctaacttcagaa 703
Query: 504 gcccaggaacattgtggacgtggacatattgataatcttacttggatgctaatataatgg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gcccaggaacattgtggacgtggacatattgataatcttacttggatgctaatataatgg 763
Query: 564 agagtaacaatggatgagtctttccaaggattggtaggaaacaggaagggcagggtaagg 623
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 764 agagtaacaatggacgagtctttccaaggattggtaggaaacaggaagggcaatgtaagg 823
Query: 624 accctagaggcaagagccaccaacattacatttga 658
||| |||||||||||||||||||||||||||||||
Sbjct: 824 accgtagaggcaagagccaccaacattacatttga 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
