Query= MSMg01no547_n03.b1 MSMg01no547_n03.b1 CHROMAT_FILE:
MSMg01no547_n03.b1 PHD_FILE: MSMg01no547_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:33 2005
(661 letters)
>mm_chr10_42327976_42329031
Length = 1056
Score = 629 bits (325), Expect = 0.0
Identities = 367/389 (94%), Gaps = 16/389 (4%)
Strand = Plus / Minus
Query: 4 ggaattcctatttattttgctagtgattaggttcgattagggcacaagtatagttctagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggaattcctatttattttgctagtgattaggttcgattagggcacaagtatagttctagg 329
Query: 64 gatgtaaggaaggaccagcagaggttcctaggagggatttttctctcactagacattatc 123
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 gatgtaagaaaggaccagcagaggctcctaggagggatttttctctcactagacattatc 269
Query: 124 tggtccagttgggctgcccagaattccagcagccacgtggcca---c------t------ 168
||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 268 tggtccagttgggctgcccagaattccagcagccacgtggccaaagcagtaaatacacaa 209
Query: 169 acaaagcagtaaatacacaaacaaaaacatgcacacttaggtaccgcagcaaagggagga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 acaaagcagtaaatacacaaacaaaaacatgcacacttaggtaccgcagcaaagggagga 149
Query: 229 acttggaaaacatgtaaaacaataggtttccgttccaggatatttgatcacaatgttatc 288
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 148 acttggaaaacatgtaaaacaataagtttccgttccaggatatttgatcacaatgttatc 89
Query: 289 ccaagacagtggaaaacttgattctagttgtggtgtggtttacccatagcacacaccttt 348
||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 88 ccaagacagtgaaaaactt-tttttagttgtggtgtggtttacccatagcacacaccttt 30
Query: 349 aacccctctggctggaaaatagacatgcc 377
|||||||||||||||||||||||||||||
Sbjct: 29 aacccctctggctggaaaatagacatgcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1056
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1046
Effective search space: 680946
Effective search space used: 680946
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_n03.g1 MSMg01no547_n03.g1 CHROMAT_FILE:
MSMg01no547_n03.g1 PHD_FILE: MSMg01no547_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:33 2005
(612 letters)
>mm_chr10_42164537_42165548
Length = 1012
Score = 1154 bits (597), Expect = 0.0
Identities = 607/612 (99%), Gaps = 3/612 (0%)
Strand = Plus / Plus
Query: 1 actacgaggataaggctggtttccaactcagaggtcctcctctccctctgctaggattac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacgaggataaggctggtttccaactcagaggtcctcctctccctctgctaggattac 260
Query: 61 acagaagcgggaccatgcctggctctaaaattgtttcttaaaaatcaagccatgcatggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagaagcgggaccatgcctggctctaaaattgtttcttaaaaatcaagccatgcatggt 320
Query: 121 aactcacacctacactagctcttgagaggttaaggttaaggtaaaggttaaagttaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactcacacctacactagctcttgagaggttaaggttaaggtaaaggttaaagttaaggt 380
Query: 181 tcaaggccatccttacctacacagtgagttcaagaccagcttgaaccacttgaaatcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaggccatccttacctacacagtgagttcaagaccagcttgaaccacttgaaatcctg 440
Query: 241 tctccaaaaccacgcagacaacagaaaacccacctgcatactaatgttctagatatttgc 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tctccaaaaccacgcagacaacagaaaacccacctgcatactgatgttctagatatttgc 500
Query: 301 tttccaaactactcctttgctttaactgctataaatgcaaagcgaccattccaaatactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccaaactactcctttgctttaactgctataaatgcaaagcgaccattccaaatactt 560
Query: 361 acatttaatgatttagatctcatcttttgttctctatgtcattaaaatttttttctttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatttaatgatttagatctcatcttttgttctctatgtcattaaaatttttttctttgt 620
Query: 421 tttttgttgttttttttttgttcttttgtctttttcgagacagggtttctctgtgtagcc 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttgttgttttttt---gttcttttgtctttttcgagacagggtttctctgtgtagcc 677
Query: 481 ctggctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatccgcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctggctgtcctggaactcactttgtagaccaggctgacctcgaactcagaaatccgcctg 737
Query: 541 cctctgcctcctgagtgctgggattaaaggtgtgcgccaccacacctggctaanattttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 738 cctctgcctcctgagtgctgggattaaaggtgtgcgccaccacacctggctaagattttt 797
Query: 601 aacattaagaat 612
||||||||||||
Sbjct: 798 aacattaagaat 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
