NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTTCTATTAAATTAATAATATTCACCTGCTTGTTGAAGGACT
GAGACATGTTAACACAACTCTGAGAAGCTAAAAATAATACCTCAACAAAT
AGTATCAAAATTATGAAATCTCTTATAAGTTCTATGTAATACAGGCTCTA
CTGAGAGTGCAGGATTTTTAAATCCTTAAGCAATTATGTTTGTCAGACAA
CTATTGCTGGCAGTATATGTATGATTTTTCAATAAAATAGAGGAATATTT
GGAGCAAACTCATGTTGAACGTATTTGGACATTTCCATCCATTTTTCTGT
TGCACAAGATATTGAAAAGGATTTTTGCCTGTGTACTACAGAATTCCACT
CTTACTTCTTGAAACTACTGAGTGGATGAATTGGACCAGTTGGTTTTTTC
TCTCTTGTCGTTTACCAAAAACAAAAGTTATGGTTTTATGGACTAAATAG
ATGGATTAGAGCAGACAGACAGCTTTGACTACAACCATGATGGCATAAGT
GATGCATGCAAAGAGTCCTGCATAAATTAGCAGTTGCTTTGATGTTCATT
CAGTCCTCCCCTTCTGTCTCCTCACCACCATTACTGGAGCATAACATCAG
AACCTTCTTTTACCTAGAGAAGTTCAGCCCTTTTTAGTGGTGAAAATGTT
CTTTCTTTGAAATAAGAGAAAA

NCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGTGACAGGAAACTATCTATAATC
CTAAGAGATGATCTTAGAGTCCCAGTAGCAAGTGATTTAGAGGAAAATAA
GCATCCTTTGATATAATGTTGTGAGAGGGGCAAGCATTGCTGAGCAGACG
CGTAATCTTCCTGCTTGTATGTACACTCCATGTGTTTTGCTGCTCAGGTA
GACATGCATAAAATTAAACTATAAGCTGAAGGGTTAGATCAGTTTTCCAA
AACAAGAGGGGCTCTCATGCTACAGAAATGTTGAGCAATAGTGTCAGGAC
TTCAAAGATAGCACAAAGATCCCAGCTGAAATGGAATTTAAATGTGAGAA
AACATAGGGAGATCTAAGTGGTTTAGTTTACATTGAAAATGGAAGTGGGT
GCCTCGTTCATTAGAAATACTGTGGAAAAGAAAAAAATTAAATATAAGCA
TATATTTGATATCTATATGGTATGAAACCTGGACNATATTAATCTATGCA
GTTTCTCTCTGACATAGTTTTAATACATCTTTTTGCTGCTNCTAGGNTAC
TGCAAAGTTTGCGTGAGTCCCANCAGGTGGCAAAAAGAAAGAGCTATTCT
ACCCTCACGTTCTGACTGTGGACACCAATGATTATAGCCTAATTTCCCGA
AAAAGAAACAAAACCTGCCAAAAAACCTAACCTGGGGCAAAGGGGAAAAG
GATGGGGGCCCCCCCGCTTGGCCCGGAAAAGGCATTTTTTTGAAAACACG
GGGCCCCCCCTCAT

Query= MSMg01no548_j15.b1 MSMg01no548_j15.b1 CHROMAT_FILE:
MSMg01no548_j15.b1 PHD_FILE: MSMg01no548_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:33 2005
         (669 letters)



>mm_chr10_106603555_106604624
          Length = 1070

 Score = 1226 bits (634), Expect = 0.0
 Identities = 658/666 (98%), Gaps = 1/666 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcttctatta-aattaataatattcacctgcttgttgaaggactgagacatgtt 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 870 gaattctcttctattataattaataatattcacctgcttgttgaaggactgagacatgat 811

                                                                       
Query: 64  aacacaactctgagaagctaaaaataatacctcaacaaatagtatcaaaattatgaaatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aacacaactctgagaagctaaaaataatacctcaacaaatagtatcaaaattatgaaatc 751

                                                                       
Query: 124 tcttataagttctatgtaatacaggctctactgagagtgcaggatttttaaatccttaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 750 tcttataagttctatgtaatacaggctctactgagagtgcaggatttttaaatccctaag 691

                                                                       
Query: 184 caattatgtttgtcagacaactattgctggcagtatatgtatgatttttcaataaaatag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caattatgtttgtcagacaactattgctggcagtatatgtatgatttttcaataaaatag 631

                                                                       
Query: 244 aggaatatttggagcaaactcatgttgaacgtatttggacatttccatccatttttctgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aggaatatttggagcaaactcatgttgaacgtatttggacatttccatccatttttctgt 571

                                                                       
Query: 304 tgcacaagatattgaaaaggatttttgcctgtgtactacagaattccactcttacttctt 363
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 570 tgcacaagatattgtaaaggatttttgcctgtgtactacagaattccactcttaattctt 511

                                                                       
Query: 364 gaaactactgagtggatgaattggaccagttggttttttctctcttgtcgtttaccaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaaactactgagtggatgaattggaccagttggttttttctctcttgtcgtttaccaaaa 451

                                                                       
Query: 424 acaaaagttatggttttatggactaaatagatggattagagcagacagacagctttgact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acaaaagttatggttttatggactaaatagatggattagagcagacagacagctttgact 391

                                                                       
Query: 484 acaaccatgatggcataagtgatgcatgcaaagagtcctgcataaattagcagttgcttt 543
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acaaccatgatggcctaagtgatgcatgcaaagagtcctgcataaattagcagttgcttt 331

                                                                       
Query: 544 gatgttcattcagtcctccccttctgtctcctcaccaccattactggagcataacatcag 603
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatgttcattcagtcctcccctcctgtctcctcaccaccattactggagcataacatcag 271

                                                                       
Query: 604 aaccttcttttacctagagaagttcagccctttttagtggtgaaaatgttctttctttga 663
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaccttcttttacctagagaaattcagccctttttagtggtgaaaatgttctttctttga 211

                 
Query: 664 aataag 669
           ||||||
Sbjct: 210 aataag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)