BAC Information

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BAC

Clone NameMSMg01-548M04
Chromosome10 (Build37)
Map Location 52,806,848 - 52,807,082
singlet/doubletsinglet
Overlap geneSlc35f1
Upstream geneRos1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa
Downstream genePln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik, Man1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548M04.T7 (MSMg01no548_m04.b1)MSMg01-548M04.TJ (MSMg01no548_m04.g1)
ACCAG613031AG613032
length829921
length of high quality
(start - end)
322 (43 - 364)---
definitionCHROMAT_FILE: MSMg01no548_m04.b1 PHD_FILE: MSMg01no548_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:46 2005CHROMAT_FILE: MSMg01no548_m04.g1 PHD_FILE: MSMg01no548_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGAAAAAGAAAGTGACTGCAAAGCATTAGAAATCACCAGTCCACCG
AAGGATATGATTTACCAGATAAGAAGACAGAAAGTTTGGAATCGAGAACT
TGTGAACACAGTCATCCTATGATCTAAATCAACAGTGCCCAAGGCAGTGA
GGCAGGCAGGCAGGCAGACAGACAGGGAGACAAAATGACAGGTAGACAGG
CAGGCAGGCAGACAGACAGGCAGGCAGACAGGGAGACAAAATGACAGGTA
GACAGGCAGGCAGGCAGACAGGCAGGCAGGCGGATGGAGGGACTGAGGGG
GCAGGGAAAGAGAGAAAGAAGGAAGAAATGAAGGGAAAAGAAGTGAAAAA
AGAAAGAAGGAAGGAAGGGAGGGAGGGAGGGAGTGAAGGTATCTTTTTCT
CAACGATATTTAATACTTCTTTTCTGTCTCTCTTTTGTTCCTTTTTCTAT
TATTTTCTTTTTTTTTTGTTTCTTTTTACTCAATTTTTCTATATTTTGTT
CTCATGACATTTCGCTCTTAATCTATTGATACACTTGCGTATGTTTACTC
CCCATATTAGTCTATTATTATTCTTCCTTTTCTTTGTTTAATAGATTTTG
TTGTTACATTGTATTTTTTTCCACTCTCTTTTTTTTTTTTATTTTCTATC
TTTCTCTCGTCCCCTTATATATATTGTAATTATTTTTATTTTTTCTCCTC
TTTATTACTCCTATAGTATTATTAGTAAATATCAGAGCGTAATGTGATCG
ATTACACTTATTATGTTTGTAATCTTACA
GGGGGGGGGGGGGGGGGNGGGGGGNNNGNGNGGGGGGNNNGGGGGNGNNG
GNGNNNGGGGGGGGGGGGGGGNGGGGGGGGGNGGNGGGGGGNNNNGNGGG
GNNNNNNGGGGGGNNNNNNNGGGNNNNNNNNNNNNNNNNNNNNGGGGNGG
NNNNNGNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGNGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGNGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGNNNGGGNNGGGNNNGGNGGGGGGNNGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGNNNNNNNNNNNNNNNGGG
GNNNNNGGGGGGGNNNNNNNNNGNNNGGGGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGNGNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGNNNNGGGGGGNNNNNGGG
NNNNNGGGGGGNNGGGGNNNNNNNNNNNNNNNNNNNGNNGNNGGGGGGGN
GGGGGNNNNNNNNGGGGGNNNNNNNNNNGGGGGGGGGGGGGNNGNNNNNN
NNGGGGGGGGGGNGGNGGGGGGNNGGGGNNNGGGGGGGGGGNNNGNNNNN
GGGGGNNNGGNNNGGNNNNNGGNGGGGGGGGGGGGGGNNNNNNNNNNNGG
GNGGGGGGNGNNGGGGGGGGGGNNNNNNNNNNNGNNNNNNNNGGNNNNGG
GGGGGGNGGGGGGNNNNNNGGGGGGGGGGGGNNNNNNNNNGGGGGGGGGG
GNGGGNNGGGGGGGNNNNNGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_m04.b1 MSMg01no548_m04.b1 CHROMAT_FILE:
MSMg01no548_m04.b1 PHD_FILE: MSMg01no548_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:46 2005
         (322 letters)



>mm_chr10_52806644_52807365
          Length = 722

 Score =  435 bits (225), Expect = e-126
 Identities = 231/235 (98%), Gaps = 4/235 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgaaaaagaaagtgactgcaaagcattagaaatcaccagtccaccgaaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgaaaaagaaagtgactgcaaagcattagaaatcaccagtccaccgaaggat 264

                                                                       
Query: 65  atgatttaccagataagaagacagaaagtttggaatcgagaacttgtgaacacagtcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgatttaccagataagaagacagaaagtttggaatcgagaacttgtgaacacagtcatc 324

                                                                       
Query: 125 ctatgatctaaatcaacagtgcccaaggcagtgaggcaggcaggcaggcag----acaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 325 ctatgatctaaatcaacagtgcccaaggcagtgaggcaggcaggcaggcaggcagacaga 384

                                                                  
Query: 181 cagggagacaaaatgacaggtagacaggcaggcaggcagacagacaggcaggcag 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagggagacaaaatgacaggtagacaggcaggcaggcagacagacaggcaggcag 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)