BAC Information

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BAC

Clone NameB6Ng01-001B01
Chromosome11 (Build37)
Map Location 37,942,600 - 37,943,757
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039148
Downstream geneLOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001B01.bB6Ng01-001B01.g
ACCDH839489DH839490
length1,1401,175
definitionDH839489|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B01, 5' end.DH839490|Mus musculus domesticus DNA, BAC clone: B6Ng01-001B01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatcatttctccttcctcctagaaccattagtttagtcacaact
accaccttgtcttacctaaatcccagcagaagcttcctgaataggtggtt
cacctgtgcctacatcaaccactccagctcaaatcatacccagtcaaagc
ccataaaattcaagtgtgtggcacttctattctcagcagcccaatgtaga
aatttgctgttttatccacaaactacaatgcaaaaacaagcaaacaaaaa
cctcaccactactaacagcaacaacaaaatacccagccaaacaagccata
tcagactttccattcacgccatttcaatggtgagattacaacaccttaaa
atttgtgcttatccaagtagacatattcacttacttcttacagagaactg
ctcctatggggtcttctctctgttcacctagcccaaactctgtctattgt
ctcttccccatacccccatgcttccttattgtaattggtttttaataatg
tgaaacaccttttaaaatgtccatagcattatttgtttattgcttatctc
ctatttactactctagaatagaaaaccctcagagaattttatggaatttg
tttcctgctgtgttgtcaggggtaatctgttggtaatctatatataaaac
tcttctacaggtgaaatgatatgtgatggcatatatctttggatttattt
atttgctattaaacacaaaattacccttattttctaagtatgaaaaaaga
atgccagcttttcttctagaaataggaccccttattttccctttattttc
actgttttattcaaggttcttactgcctttctggttttgtacaattttct
tttctgttttatataatcttcaataagtctagagtccctctcatctacat
tatagattacccatatagaatggatctttagaaactattctatactattt
tgctcaaatagaccctcaagtatagaaatgtgaacactttctttgatcta
taaacctcctctctggtgttatgtatttccattacactcacatgtcagcc
atggctatctacaccacagatctacatccacactctagaaagggagggag
gaacagtgacagtttcagtcttttgatcattgggagaggc
gaattctcccctgaggaataccgaatggaagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaaaaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatt
cagcttccaaatgctgacaccattgcatacactaagcaagattttactga
aaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaa
cacagaagtgtatgctcacagtcagctaatggtggatcacagggcttcca
atggaggagctagagaaagtacccaaggagctaaagggatcggcaaccta
taggtggaacacattatgaactaaccagtacccctggagctcttggatct
agctgctatgtatcaaaggatggctaatcggccatcactggaaaggaggc
ccattgggaacgcaactttcgtgtgcccgggatcaaggggaacgccaagg
ctaatggggggggaatggggggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37942600_37943757
seq2: B6Ng01-001B01.b_40_1179 (reverse)

seq1  GCCTCTCCC-ATGATCAAAAGACTGAAATTGTCCACTGTTTCCTCCTTCC  49
      ||||||||| |||||||||||||||||| ||| ||||| ||||||| |||
seq2  GCCTCTCCCAATGATCAAAAGACTGAAACTGT-CACTG-TTCCTCCCTCC  48

seq1  CTTTCCTAGAGTGTGGATGTAGAATCTTGTGTGTTAGATAAGCCATGGGT  99
      |||| ||||||||||||||||| ||| ||||   ||||| ||||||||  
seq2  CTTT-CTAGAGTGTGGATGTAG-ATC-TGTGGTGTAGAT-AGCCATGG--  92

seq1  TTGCCATTGTGGAGTGTAATGGAAATACAATACCACCAGAGGAGGAGGTT  149
       || || ||| ||||||||||||||||| ||| ||||||| ||||||| |
seq2  CTGACA-TGT-GAGTGTAATGGAAATAC-ATAACACCAGA-GAGGAGG-T  137

seq1  TTATAGATCAAAAGAAGGTGTTCACATTTCTATACTTTGAGGGTCTTATT  199
      ||||||||| |||||| |||||||||||||||||| ||||||||||   |
seq2  TTATAGATC-AAAGAAAGTGTTCACATTTCTATAC-TTGAGGGTCT--AT  183

seq1  TTGAGCAAAATAGTTATAGAATAGTTTCTTAAAGATCCATTCTATATGGG  249
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  TTGAGCAAAATAG-TATAGAATAGTTTC-TAAAGATCCATTCTATATGGG  231

seq1  TAATCTATAATGTAGATGAGAGGGACTCTAGACTTATTGAAGATTATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATAATGTAGATGAGAGGGACTCTAGACTTATTGAAGATTATATA  281

seq1  AAACAGAAAAGAAAATTGTACAAAACCAGAAAGGCAGTAAGAACCTTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAAAGAAAATTGTACAAAACCAGAAAGGCAGTAAGAACCTTGAA  331

seq1  TAAAACAGTGAAAATAAAGGGAAAATAAGGGGTCCTATTTCTAGAAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTGAAAATAAAGGGAAAATAAGGGGTCCTATTTCTAGAAGAAA  381

seq1  AGCTGGCATTCTTTTTTAATACTTAGAAAATAAGGGTAATTTTGTGTTTA  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTGGCATTCTTTTTTCATACTTAGAAAATAAGGGTAATTTTGTGTTTA  431

seq1  ATAGCAAATAAATAAATCCAAAGATATATGCCATCACATATCATTTCACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAATAAATAAATCCAAAGATATATGCCATCACATATCATTTCACC  481

seq1  TGTAGAAGAGTTTTATATATAGATTACCAACAGATTACCCCTGACAACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAGTTTTATATATAGATTACCAACAGATTACCCCTGACAACAC  531

seq1  AGCAGGAAACAAATTCCATAAAATTCTCTGAGGGTTTTCTATTCTAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAACAAATTCCATAAAATTCTCTGAGGGTTTTCTATTCTAGAGT  581

seq1  AGTAAATAGGAGATAAGCAATAAACAAATAATGCTATGGACATTTTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAGGAGATAAGCAATAAACAAATAATGCTATGGACATTTTAAAA  631

seq1  GGTGTTTCACATTATTAAAAACCAATTACAATAAGGAAGCATGGGGGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCACATTATTAAAAACCAATTACAATAAGGAAGCATGGGGGTAT  681

seq1  GGGGAAGAGACAATAGACAGAGTTTGGGCTAGGTGAACAGAGAGAAGACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGACAATAGACAGAGTTTGGGCTAGGTGAACAGAGAGAAGACC  731

seq1  CCATAGGAGCAGTTCTCTGTAAGAAGTAAGTGAATATGTCTACTTGGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGAGCAGTTCTCTGTAAGAAGTAAGTGAATATGTCTACTTGGATA  781

seq1  AGCACAAATTTTAAGGTGTTGTAATCTCACCATTGAAATGGCGTGAATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATTTTAAGGTGTTGTAATCTCACCATTGAAATGGCGTGAATGG  831

seq1  AAAGTCTGATATGGCTTGTTTGGCTGGGTATTTTGTTGTTGCTGTTAGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGATATGGCTTGTTTGGCTGGGTATTTTGTTGTTGCTGTTAGTA  881

seq1  GTGGTGAGGTTTTTGTTTGCTTGTTTTTGCATTGTAGTTTGTGGATAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGGTTTTTGTTTGCTTGTTTTTGCATTGTAGTTTGTGGATAAAA  931

seq1  CAGCAAATTTCTACATTGGGCTGCTGAGAATAGAAGTGCCACACACTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATTTCTACATTGGGCTGCTGAGAATAGAAGTGCCACACACTTGA  981

seq1  ATTTTATGGGCTTTGACTGGGTATGATTTGAGCTGGAGTGGTTGATGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGGCTTTGACTGGGTATGATTTGAGCTGGAGTGGTTGATGTAG  1031

seq1  GCACAGGTGAACCACCTATTCAGGAAGCTTCTGCTGGGATTTAGGTAAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGTGAACCACCTATTCAGGAAGCTTCTGCTGGGATTTAGGTAAGA  1081

seq1  CAAGGTGGTAGTTGTGACTAAACTAATGGTTCTAGGAGGAAGGAGAAATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGTAGTTGTGACTAAACTAATGGTTCTAGGAGGAAGGAGAAATG  1131

seq1  ATTGAATTC  1158
      |||||||||
seq2  ATTGAATTC  1140