BAC Information

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BAC

Clone NameB6Ng01-001E12
Chromosome11 (Build37)
Map Location 22,154,336 - 22,275,324
singlet/doubletdoublet
Overlap geneEhbp1, LOC100042146
Upstream geneVps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, AV249152, Pgam1-ps1, LOC382494, LOC666047, Otx1
Downstream geneTmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E12.bB6Ng01-001E12.g
ACCDH839650DH839651
length1,0831,146
definitionDH839650|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E12, 5' end.DH839651|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,274,233 - 22,275,324)(22,154,336 - 22,155,495)
sequence
gaattccctggatcagagatgtgcattctcaggcaggagttgtgctggga
ggctcttgggttttggctgtcttagcatgtgtttgtgctatcagtgcctg
aagtggcaataaagccctattcacagaagatgctatgtcaggccccacac
tggcttctattatgccaatccttggggctattttaaacagctttatctgc
tcctcctactttcttagcattagccatgtgcccatttctcctggctattt
atttaactccggtgtacctgtttggacaggaattagaaagccctgctgat
ggtagcttacagggttacttggggtctgtacagacttgctatttctcaga
ttatttatacaatttatttgtctgcattttcttactcctgtatctctaaa
attcatcttaatgcaatacagcccttagtgccaagccaatttttttctaa
tacatgttttccctaaagccccaatatcttcatttccttttttgtttttg
ttggtgccgcctaaaccacagctacaaggcagaaaaaataataataataa
aaatttaaaaaccctagtagcaagcacatcaggattaacatactagggct
atgttaaaccacccaacaatgaactaactcatcttaattatagttgttct
gtataaatctgatgaaagtaaaagctgtgagattatacataaatatttaa
tcaactttgcaaacaaacctccaaaaataggaaatgttagcagggagtgt
gccatctttaattcattgctctgttcttaggcaattccttgcatgtagga
tggaaactcatagaagcatttttcaaaaactttacaggttcgcaaactct
tggttacaggcataatcagaaatagcataatattctaaacgttaggacct
aatttgtgtggtattctgtataacattggcagaaaaaattattttttttt
cagaaataggtctgtattctagaaggcaaaaatcaagtcctttaagagaa
agcttggagttttgcctgcatcgtgaccagcattagagccatagctgaag
attagccttgcgaactgaaaacatcttaaaaca
gaattcttccttcaatggtacagacactctaaggaacccatattcctacg
agcaaactctcatctatgctcctgaaaataaatctaaggaaactcataac
acacacacacagacacacacagagtcataaaaacagaaatagaactagtt
gaaaagaggaagagaactagctaataaaatacttttgttttgttttgttt
tgttttgtttgtttgtttgttttgagacagggtttctctgtatagctctg
gctgtcctggaactcattttgtagactaggctggtctcgaactcagaaat
ccacctgcctctgcctcttgagtgctgggattaaaggcgtgtgccaccac
gcctggctaaaaacacttttatattaaaatttcttagacaaggcagaaaa
aagaaatatgcttttctgtaccttcaactatttatttatattatatttaa
attagatttatatcatttatattatttgatactgggagtggcataaatat
gtacaatgagttacaacattttttaactttagaattaagagaggagaaaa
atgaacttgatttttaaaatttattgagtctaaagagtcttcagactgaa
ttttgttttctaagtgaacagactatgggggaaagagtagcaattctatc
ttcagttaactcggtatttccaaggtctaagaaaagtgtttaagcattgt
ctacttggcccctggcatccttcccttctgaagccactctactcctaggt
ccttcctacagtagtcccgagaggctgggtggggccaaataataccataa
gtgcttcagatctcatattctcctcaatatcaattaaaactctcactttg
ccaaagtttagtatctagaggaaaaaatataaggaaacatttgtttgagc
ctaggagacacacttcgatagagaagtcacttccagatgctacaatccag
aggaactcagactgggagacagagcatttgcttttctctttcacatatgg
taaatccagagaatgcagctagactggggcagcacacttgcttttctaga
tctggcacgagaactttagaaattttctcagttgttatccaatgtaaggg
gctagacaaaactaaagctagttcttaaggcaggcttcggttgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_22274233_22275324
seq2: B6Ng01-001E12.b_46_1128 (reverse)

seq1  TGTTTTAAGATGTTTTCAGTTCGGCAGGGCTTAATCTTTCAGCTATGGCT  50
      |||||||||||||||||||||| ||| ||| ||||| |||||||||||||
seq2  TGTTTTAAGATGTTTTCAGTTC-GCAAGGC-TAATC-TTCAGCTATGGCT  47

seq1  CTAATGCTGGCTACGATGCCAGGCAAAACTCAAAGCTATCTTCTTATAGT  100
      ||||||||||  |||||| |||||||||||| ||||| || ||||| || 
seq2  CTAATGCTGGTCACGATG-CAGGCAAAACTCCAAGCTTTC-TCTTAAAGG  95

seq1  ACTTGATTTTTGCC-TCTAGAATTACAGACCTATTTCTGAAAAAAAAATA  149
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ACTTGATTTTTGCCTTCTAGAA-TACAGACCTATTTCTGAAAAAAAAATA  144

seq1  TTTTTTCCTGCCAATGTTATACAGAATA-CACACAAATTAGGTCCTAACG  198
       ||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTTTTCTGCCAATGTTATACAGAATACCACACAAATTAGGTCCTAACG  194

seq1  TTTAGAGTAATATGCTA-TTCTGATTATGCCTGT-ACCAAGAGTTTGCGA  246
      |||||| || ||||||| |||||||||||||||| |||||||||||||||
seq2  TTTAGAATATTATGCTATTTCTGATTATGCCTGTAACCAAGAGTTTGCGA  244

seq1  A-CTGTAAAGTCTTTG-AAAATGCTTCTATGAGTTTTCATCCTACATGCA  294
      | ||||||||| |||| ||||||||||||||||||| |||||||||||||
seq2  ACCTGTAAAGTTTTTGAAAAATGCTTCTATGAGTTTCCATCCTACATGCA  294

seq1  AGGAATTGCCTAAGAACAGAGCAATGAATTAAAGATGGCACAACTCCCTT  344
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  AGGAATTGCCTAAGAACAGAGCAATGAATTAAAGATGGCAC-ACTCCC-T  342

seq1  GCTTAACATTTCCTATTTTTTGGAGGTTTGTTTTGCAACTTTAAT-----  389
      || |||||||||||| |||||||||||||| |||||||  || ||     
seq2  GC-TAACATTTCCTA-TTTTTGGAGGTTTG-TTTGCAAAGTTGATTAAAT  389

seq1  -GTTAT---TAATCTACACAAGCTTTTTAACTTTTCATTCAGAATTTATA  435
        ||||   |||||| ||| |||||||  || ||||| |||| |||||||
seq2  ATTTATGTATAATCT-CAC-AGCTTTT--AC-TTTCA-TCAG-ATTTATA  432

seq1  TCAGAATCAAGCTAATAAATTAAAGATGAGTTAGTTCATTGTTGGGTGGT  485
       ||||| ||| || ||||  | ||||||||||||||||||||||||||||
seq2  -CAGAA-CAA-CT-ATAA--TTAAGATGAGTTAGTTCATTGTTGGGTGGT  476

seq1  TTAACATAGCCCTAGTATGTTAATCCTGATGTGCTTGCTACTAGGGTTTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAGCCCTAGTATGTTAATCCTGATGTGCTTGCTACTAGGGTTTT  526

seq1  TAAATTTTTATTATTATTATTTTTTCTGCCTTGTAGCTGTGGTTTAGGCG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTATTATTATTATTTTTTCTGCCTTGTAGCTGTGGTTTAGGCG  576

seq1  GCAGCAATAAATCAGAACAAAGG-AATGAAGATATTGGGGCTTTAGGGAA  634
      ||| ||| |||  | || ||||| ||||||||||||||||||||||||||
seq2  GCACCAACAAA-AACAAAAAAGGAAATGAAGATATTGGGGCTTTAGGGAA  625

seq1  AACATGTATTAGAAAAAAATTGGCTTGGCACTAAGGGCTGTATTGCATTA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATTAGAAAAAAATTGGCTTGGCACTAAGGGCTGTATTGCATTA  675

seq1  AGATGAATTTTAGAGATACAGGAGTAAGAAAATGCAGACAAATAAATTGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTTTAGAGATACAGGAGTAAGAAAATGCAGACAAATAAATTGT  725

seq1  ATAAATAATCTGAGAAATAGCAAGTCTGTACAGACCCCAAGTAACCCTGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATCTGAGAAATAGCAAGTCTGTACAGACCCCAAGTAACCCTGT  775

seq1  AAGCTACCATCAGCAGGGCTTTCTAATTCCTGTCCAAACAGGTACACCGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCATCAGCAGGGCTTTCTAATTCCTGTCCAAACAGGTACACCGG  825

seq1  AGTTAAATAAATAGCCAGGAGAAATGGGCACATGGCTAATGCTAAGAAAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAATAAATAGCCAGGAGAAATGGGCACATGGCTAATGCTAAGAAAG  875

seq1  TAGGAGGAGCAGATAAAGCTGTTTAAAATAGCCCCAAGGATTGGCATAAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAGCAGATAAAGCTGTTTAAAATAGCCCCAAGGATTGGCATAAT  925

seq1  AGAAGCCAGTGTGGGGCCTGACATAGCATCTTCTGTGAATAGGGCTTTAT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAGTGTGGGGCCTGACATAGCATCTTCTGTGAATAGGGCTTTAT  975

seq1  TGCCACTTCAGGCACTGATAGCACAAACACATGCTAAGACAGCCAAAACC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTCAGGCACTGATAGCACAAACACATGCTAAGACAGCCAAAACC  1025

seq1  CAAGAGCCTCCCAGCACAACTCCTGCCTGAGAATGCACATCTCTGATCCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCCTCCCAGCACAACTCCTGCCTGAGAATGCACATCTCTGATCCA  1075

seq1  GGGAATTC  1092
      ||||||||
seq2  GGGAATTC  1083

seq1: chr11_22154336_22155495
seq2: B6Ng01-001E12.g_67_1212

seq1  GAATTCTTCCTTCAATGGTACAGACACTCTAAGGAACCCATATTCCTACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTCAATGGTACAGACACTCTAAGGAACCCATATTCCTACG  50

seq1  AGCAAACTCTCATCTATGCTCCTGAAAATAAATCTAAGGAAACTCATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTCTCATCTATGCTCCTGAAAATAAATCTAAGGAAACTCATAAC  100

seq1  ACACACACACAGACACACACAGAGTCATAAAAACAGAAATAGAACTAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGACACACACAGAGTCATAAAAACAGAAATAGAACTAGTT  150

seq1  GAAAAGAGGAAGAGAACTAGCTAATAAAATACTTTTGTTTTGTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGGAAGAGAACTAGCTAATAAAATACTTTTGTTTTGTTTTGTTT  200

seq1  TGTTTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTATAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTATAGCTCTG  250

seq1  GCTGTCCTGGAACTCATTTTGTAGACTAGGCTGGTCTCGAACTCAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCATTTTGTAGACTAGGCTGGTCTCGAACTCAGAAAT  300

seq1  CCACCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGGCGTGTGCCACCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCTTGAGTGCTGGGATTAAAGGCGTGTGCCACCAC  350

seq1  GCCTGGCTAAAAACACTTTTATATTAAAATTTCTTAGACAAGGCAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTAAAAACACTTTTATATTAAAATTTCTTAGACAAGGCAGAAAA  400

seq1  AAGAAATATGCTTTTCTGTACCTTCAACTATTTATTTATATTATATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATATGCTTTTCTGTACCTTCAACTATTTATTTATATTATATTTAA  450

seq1  ATTAGATTTATATCATTTATATTATTTGATACTGGGAGTGGCATAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTATATCATTTATATTATTTGATACTGGGAGTGGCATAAATAT  500

seq1  GTACAATGAGTTACAACATTTTTTAACTTTAGAATTAAGAGAGGAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATGAGTTACAACATTTTTTAACTTTAGAATTAAGAGAGGAGAAAA  550

seq1  ATGAACTTGATTTTTAAAATTTATTGAGTCTAAAGAGTCTTCAGACTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGATTTTTAAAATTTATTGAGTCTAAAGAGTCTTCAGACTGAA  600

seq1  TTTTGTTTTCTAAGTGAACAGACTATGGGGGAAAGAGTAGCAATTCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCTAAGTGAACAGACTATGGGGGAAAGAGTAGCAATTCTATC  650

seq1  TTCAGTTAACTCGGTATTTCCAAGGTCTAAGAAAAGTGTTTAAGCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTAACTCGGTATTTCCAAGGTCTAAGAAAAGTGTTTAAGCATTGT  700

seq1  CTACTTGGCCCCTGGCATCCTTCCCTTCTGAAGCCACTCTACTCCTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGGCCCCTGGCATCCTTCCCTTCTGAAGCCACTCTACTCCTAGGT  750

seq1  CCTTCCTACAGTAGTCCCGAGAGGCTGGGTGGGGCCAAATAATACCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTACAGTAGTCCCGAGAGGCTGGGTGGGGCCAAATAATACCATAA  800

seq1  GTGCTTCAGATCTCATATTCTCCTCAATATCAATTAAAACTCTCACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCAGATCTCATATTCTCCTCAATATCAATTAAAACTCTCACTTTG  850

seq1  CCAAAGTTTAGTATCTAAGAGGAAAAAAATATAAGGAAACATTTGTTTGA  900
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  CCAAAGTTTAGTATCT-AGAGG-AAAAAATATAAGGAAACATTTGTTTGA  898

seq1  GCCTAGGAGACACACTTCGATAGAAGAAGTCACTTCCCAGATGCTACAAT  950
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GCCTAGGAGACACACTTCGATAG-AGAAGTCACTT-CCAGATGCTACAAT  946

seq1  CCAGAGGAACTCAAGACTGGGAGACAGAGCATTTGCTTTTCTCCTTTCAC  1000
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CCAGAGGAACTC-AGACTGGGAGACAGAGCATTTGCTTTTCT-CTTTCAC  994

seq1  ATATGGTAAAATCCAGAGAAAGGCAGCCTAGACTGGGGCAGCACACTTGC  1050
      ||||||| |||||||||| || |||| |||||||||||||||||||||||
seq2  ATATGGT-AAATCCAGAG-AATGCAG-CTAGACTGGGGCAGCACACTTGC  1041

seq1  TTTTCCTAGATCTGGCACCAAAGACCTTAGAAATATTTCTCAGTTGTTAT  1100
      |||| ||||||||||||| | | || |||||||| |||||||||||||||
seq2  TTTT-CTAGATCTGGCACGAGA-ACTTTAGAAAT-TTTCTCAGTTGTTAT  1088

seq1  CAAATGTAAAGGGGCTAGACAAAAACTAAAGCTAGTCCTAAATGCAGTGC  1150
      | ||||| |||||||||||| ||||||||||||||| || || |||| ||
seq2  CCAATGT-AAGGGGCTAGAC-AAAACTAAAGCTAGTTCTTAAGGCAG-GC  1135

seq1  TTCGG-TGACT  1160
      ||||| |||||
seq2  TTCGGTTGACT  1146