BAC Information

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BAC

Clone NameB6Ng01-001E16
Chromosome11 (Build37)
Map Location 68,696,744 - 68,697,802
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1
Downstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001E16.bB6Ng01-001E16.g
ACCDH839658DH839659
length6431,061
definitionDH839658|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E16, 5' end.DH839659|Mus musculus domesticus DNA, BAC clone: B6Ng01-001E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagagatccgccttcctgtgcctccagagtgcatcttcatgcc
tggccaaatacattacttttaaagcataacctttcacctctggcccctga
agcctcatgttatcttttaaaacatcttaataataatgttatctgttgtg
tcgggccagcagatcacagcctgggttctagcctggaaaggcattttgga
aacctggaagagaagaagggctaggcgggcaagaaaaggatgcagctaag
acagacattctgatcaaagctcaattttactattctgcatgcagttatga
agcaggggaagggggcccgattcacgccaaataatcttggaatccagtag
cagggtgaccacgtgatggcttcggaacaggaaagcggcaggctccagca
gtgggcgtggcagaacgattgagcggcaagctccatccaggtgtaaacag
tggaaccattaaggctgggggaggggaggctacagttatctatattattt
ctgtgtgtgtgagtgcgcacactcaggggcagatacgtgccacagcatgc
atgtatgcatgtggaggtcagaggacaactttgtgcagttgtttctgttt
tttttgtttgtttgtttgttcgttttattttttgggacagggt
gaattcagagatcaagacatgtgccaccagcgggcctcaattattaaaac
ctcaacaattgaaacttcagacagagtgagtgcctgacagaagccactgt
gaggacaacagaattgtttcggttatggcattttgttgtcaggttgggct
aaatgggctcaggacccaggagaggtaaatcgaggatgaaaaccatccct
tgatctgccaactgagccattgaacttggaggagctcaggtgaccctgac
cttttgctcccactgtggagggctggggttacagacgtgtgccaacatgc
ctggttttgagcactgtcaagaactgaacccagggcctcttgcacagtgt
gctcccatcctaaccaactaagctacatctcctgcaccctcacccttctg
actgtatccccaggagtggacttgctaggtcattctgtatttaaatgttt
taggaatcgctacatggctttccacagacaccacataattttacattgcc
tccaggaggacacaagggatccaatttacccacaactcaccaatgcttgt
atctgctgcggtttctatgcaaacctatgaatgtgtgtgaaggctggcaa
ggcagtagctacatgggggactgagaagaaaccctagctgccatcttaat
attccctcaccttggaaccctctgaatgtgttcttttgtcaatatctatt
tttgaaaacccttagtatatcaaggttgtaattctcagatgagccaggcc
tggacttgaccattagtacacactattttttttttttttgcatatttcga
atctgtccatcagtcctttccaatatttaaaaataaatatagaatatagc
tttcttggacttttcctaacatctgttaagtccttaaccagagcctgaag
ctttgcgtttcttttctttttttttttttttttttggttttcgagacagg
gttctttgtaaagccttgtctgtctggaactcactcttgtagaaccaggc
tgggcccacaggctagctttgttttcttatcagttttccaaggggaattt
tgcatttggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_68696744_68697802
seq2: B6Ng01-001E16.g_71_1131

seq1  GAATTCAGAGATCAAGACATGTGCCACCAGCGGGCCTCAATTATTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCAAGACATGTGCCACCAGCGGGCCTCAATTATTAAAAC  50

seq1  CTCAACAATTGAAACTTCAGACAGAGTGAGTGCCTGACAGAAGCCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAATTGAAACTTCAGACAGAGTGAGTGCCTGACAGAAGCCACTGT  100

seq1  GAGGACAACAGAATTGTTTCGGTTATGGCATTTTGTTGTCAGGTTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAACAGAATTGTTTCGGTTATGGCATTTTGTTGTCAGGTTGGGCT  150

seq1  AAATGGGCTCAGGACCCAGGAGAGGTAAATCGAGGATGAAAACCATCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCTCAGGACCCAGGAGAGGTAAATCGAGGATGAAAACCATCCCT  200

seq1  TGATCTGCCAACTGAGCCATTGAACTTGGAGGAGCTCAGGTGACCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGCCAACTGAGCCATTGAACTTGGAGGAGCTCAGGTGACCCTGAC  250

seq1  CTTTTGCTCCCACTGTGGAGGGCTGGGGTTACAGACGTGTGCCAACATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCCCACTGTGGAGGGCTGGGGTTACAGACGTGTGCCAACATGC  300

seq1  CTGGTTTTGAGCACTGTCAAGAACTGAACCCAGGGCCTCTTGCACAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGAGCACTGTCAAGAACTGAACCCAGGGCCTCTTGCACAGTGT  350

seq1  GCTCCCATCCTAACCAACTAAGCTACATCTCCTGCACCCTCACCCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATCCTAACCAACTAAGCTACATCTCCTGCACCCTCACCCTTCTG  400

seq1  ACTGTATCCCCAGGAGTGGACTTGCTAGGTCATTCTGTATTTAAATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCCCCAGGAGTGGACTTGCTAGGTCATTCTGTATTTAAATGTTT  450

seq1  TAGGAATCGCTACATGGCTTTCCACAGACACCACATAATTTTACATTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATCGCTACATGGCTTTCCACAGACACCACATAATTTTACATTGCC  500

seq1  TCCAGGAGGACACAAGGGATCCAATTTACCCACAACTCACCAATGCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGGACACAAGGGATCCAATTTACCCACAACTCACCAATGCTTGT  550

seq1  ATCTGCTGCGGTTTCTATGCAAACCTATGAATGTGTGTGAAGGCTGGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTGCGGTTTCTATGCAAACCTATGAATGTGTGTGAAGGCTGGCAA  600

seq1  GGCAGTAGCTACATGGGGGACTGAGAAGAAACCCTAGCTGCCATCTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTAGCTACATGGGGGACTGAGAAGAAACCCTAGCTGCCATCTTAAT  650

seq1  ATTCCCTCACCTTGGAACCCTCTGAATGTGTTCTTTTGTCAATATCTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCACCTTGGAACCCTCTGAATGTGTTCTTTTGTCAATATCTATT  700

seq1  TTTGAAAACCCTTAGTATATCAAGGTTGTAATTCTCAGATGAGCCAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACCCTTAGTATATCAAGGTTGTAATTCTCAGATGAGCCAGGCC  750

seq1  TGGACTTGACCATTAGTACACACTATTTTTTTTTTTTTTGCATATTTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGACCATTAGTACACACTATTTTTTTTTTTTTTGCATATTTCGA  800

seq1  ATCTGTCCATCAGTCC-TTCCAATATTTAAAAATAAATATAGAATATAGC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATCTGTCCATCAGTCCTTTCCAATATTTAAAAATAAATATAGAATATAGC  850

seq1  -TTCTTGGACTTTTCCTAACATCTGTTAAGTCCTTAACCAGAGCCTGAAG  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGACTTTTCCTAACATCTGTTAAGTCCTTAACCAGAGCCTGAAG  900

seq1  CTTTG-TTTTCTTTTCTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACA  947
      |||||  ||||||||||||||||||||||||||||  | |||||||||||
seq2  CTTTGCGTTTCTTTTCTTTTTTTTTTTTTTTTTTT--GGTTTTCGAGACA  948

seq1  GGGTTTCTCTGTAAAGCCCTGTCTGTCCTGGAACTCACTC-TGTAG-ACC  995
      ||| |||| ||||||||| ||||||| ||||||||||||| ||||| |||
seq2  GGG-TTCTTTGTAAAGCCTTGTCTGT-CTGGAACTCACTCTTGTAGAACC  996

seq1  AGGCT-GGCCCACAGGCTAGCTTTGTTTTCTTAATCAGTTTTCC-AGGGG  1043
      ||||| |||||||||||||||||||||||||| ||||||||||| |||||
seq2  AGGCTGGGCCCACAGGCTAGCTTTGTTTTCTT-ATCAGTTTTCCAAGGGG  1045

seq1  ATTTTGGCATTTGGGA  1059
      | ||| ||||||||||
seq2  AATTTTGCATTTGGGA  1061