BAC Information

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BAC

Clone NameB6Ng01-001P23
Chromosome11 (Build37)
Map Location 83,943,938 - 84,074,693
singlet/doubletdoublet
Overlap geneOTTMUSG00000000997, Acaca
Upstream geneSlfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l
Downstream geneLOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001P23.bB6Ng01-001P23.g
ACCDH840153DH840154
length1,1031,155
definitionDH840153|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P23, 5' end.DH840154|Mus musculus domesticus DNA, BAC clone: B6Ng01-001P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,943,938 - 83,945,261)(84,073,532 - 84,074,693)
sequence
gaattcatttatacgatatctgcccgtgtggcatcttgatttgttttttg
gtacacaggtaatataagtctattgttaaaataaaaataaaatctgcagc
tgggtgcaattagtggctcacatctgtgatctcaacacttggagagtgca
ggacaattgctttgagattgagatcaatctgggctacagagtaagagatc
tgtctcaaaaaaaaaaagagtagtaaagaaaaaacattaaaaattcacat
gtgaaagtcatccccaccacgttaaataaacagttgatgctatagagtac
ttcacatttactgactctccaaatccattcatttcacaaaagcacaacga
acagccacttccctgggtgctgagaatttggtagtgagcgaagtatatgc
tcttgcacataaggtttgtgtattttatatataagcaataaaatataagt
atgttgcatattaatatataagtaacaaatatttttaaatgcctcataat
gtggttttatgggaaataaatcaggatccagatataacagtgatagattt
tcttttagtcaggatagggaagaaaggcttcctagcagacataacacaca
agaggaaatccaattattgaatgagaaacagaagcttccagatttctaga
gagaaccatagatgagactcagcaggtacggtggccctggtgcgtggctt
tgataggcatggagaagaagaagcaagaaggtcagagtggctggagcaga
tccaagtaaagagatttgatggaaaacagcctggacccaggtcccacatc
acttggtaaactttggttggatttttttatttcactgggatatgatagaa
ttccatgaaagggtagacatcaatgtatttaagaaaagaatagtggctca
tgcctgtaatgcctagcacacagacgtcagcctacgcaaaaattccagtt
cagtccgtgcatgtgaccctgactcaaaaatgataactgaaatggtccat
gtctgtaaaatcaaaaaaatagaaaattaaattgttctagagatgaaatt
ttatggattaaatgattccaaggaatcatcgagttgatgtcatagctgaa
tca
gaattcaagatggaaacaagggaagaacagggcccggggagatggctcag
tggattcaagcattagaacctgagttcagactccccaggacccacagaaa
aacgctgagtgtagccacacaaagcactgtgcttgttggaggcagagggg
tgagaagcaggactgctgggaattgctggctaccagcctagctccaggtt
caataagaaaaccctgtctccagggaatagggtagagcgtgataaggcag
gacactcaatgccctcttctgatacacatacatgcagagagcacatacac
acactctcacacatatgcaaaataggacggaaggagggaaaggatgggag
aggacgaggaaccagcaaaccaagcacctccaagctaccatgtttttcac
cctcgcagcggttttcagtgccttcctcctcacctgttgaactttactgg
ggttgtccagttgcattttggctatcacacagccagggtcaagtgctgct
ccaggtcgtttgacataatggatgcagccagattctacagctgttaaagt
catcaccatcttcattacctgtcatgaagatgtaagttagagcctgatct
ccctttatggacatgaacagtttaaaggtcaggtttctcctatcatctca
attggaaaacacttaatttaacaccccaaaatacaatctatcaaaatctc
caggcaattggtaaatttctcagaaataaatctaagggctaataacagat
actgattcctgggttgtttttaggccgttgtctgctttcacggatcattt
tgtccaaagctcactctgaagttgaggatgacgctgaactcctgacccgc
ctgcctaccacgtgcctagcactttcctaactttgaaacacattctgctg
ctgttgtgattctgtctgtctgtccatatttatattagaagtgatggact
gtctgtcttcatgatagcagcattttcacacttttcctttcacctaccac
cagtccagtaagtacacctttctaatgtatcagaaacatcctctttgcag
tgactttgcgcctaggccattcaggactagaggttcttttcaagctacca
tgagagttcttcatgggcattaccgttgatacgttccgaactatagccta
gagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83943938_83945261
seq2: B6Ng01-001P23.b_45_1147

seq1  GAATTCATTTATACGATATCTGCCCGTGTGGCATCTTGATTTGTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATACGATATCTGCCCGTGTGGCATCTTGATTTGTTTTTTG  50

seq1  GTACACAGGTAATATAAGTCTATTGTTAAAATAAAAATAAAATCTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGGTAATATAAGTCTATTGTTAAAATAAAAATAAAATCTGCAGC  100

seq1  TGGGTGCAATTAGTGGCTCACATCTGTGATCTCAACACTTGGAGAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCAATTAGTGGCTCACATCTGTGATCTCAACACTTGGAGAGTGCA  150

seq1  GGACAATTGCTTTGAGATTGAGATCAATCTGGGCTACAGAGTAAGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTGCTTTGAGATTGAGATCAATCTGGGCTACAGAGTAAGAGATC  200

seq1  TGTCTCAAAAAAAAAAAGAGTAGTAAAGAAAAAACATTAAAAATTCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAAAAAAAGAGTAGTAAAGAAAAAACATTAAAAATTCACAT  250

seq1  GTGAAAGTCATCCCCACCACGTTAAATAAACAGTTGATGCTATAGAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTCATCCCCACCACGTTAAATAAACAGTTGATGCTATAGAGTAC  300

seq1  TTCACATTTACTGACTCTCCAAATCCATTCATTTCACAAAAGCACAACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTACTGACTCTCCAAATCCATTCATTTCACAAAAGCACAACGA  350

seq1  ACAGCCACTTCCCTGGGTGCTGAGAATTTGGTAGTGAGCGAAGTATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACTTCCCTGGGTGCTGAGAATTTGGTAGTGAGCGAAGTATATGC  400

seq1  TCTTGCACATAAGGTTTGTGTATTTTATATATAAGCAATAAAATATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACATAAGGTTTGTGTATTTTATATATAAGCAATAAAATATAAGT  450

seq1  ATGTTGCATATTAATATATAAGTAACAAATATTTTTAAATGCCTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCATATTAATATATAAGTAACAAATATTTTTAAATGCCTCATAAT  500

seq1  GTGGTTTTATGGGAAATAAATCAGGATCCAGATATAACAGTGATAGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTATGGGAAATAAATCAGGATCCAGATATAACAGTGATAGATTT  550

seq1  TCTTTTAGTCAGGATAGGGAAGAAAGGCTTCCTAGCAGACATAACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTCAGGATAGGGAAGAAAGGCTTCCTAGCAGACATAACACACA  600

seq1  AGAGGAAATCCAATTATTGAATGAGAAACAGAAGCTTCCAGATTTCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATCCAATTATTGAATGAGAAACAGAAGCTTCCAGATTTCTAGA  650

seq1  GAGAACCATAGATGAGACTCAGCAGGTACGGTGGCCCTGGTGCGTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCATAGATGAGACTCAGCAGGTACGGTGGCCCTGGTGCGTGGCTT  700

seq1  TGATAGGCATGGAGAAGAAGAAGCAAGAAGGTCAGAGTGGCTGGAGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCATGGAGAAGAAGAAGCAAGAAGGTCAGAGTGGCTGGAGCAGA  750

seq1  TCCAAGTAAAGAGATTTGATGGAAAACAGCCTGGACCCAGGTCCCACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAAAGAGATTTGATGGAAAACAGCCTGGACCCAGGTCCCACATC  800

seq1  ACTTGGTAAACTTTGGTTGGATTTTTTTATTTCACTGGGATATGATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTAAACTTTGGTTGGATTTTTTTATTTCACTGGGATATGATAGAA  850

seq1  TTCCATG-AAGGGTAGACATCAATGTATTTAAGAAAAGAATAGTGGCTCA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGAAAGGGTAGACATCAATGTATTTAAGAAAAGAATAGTGGCTCA  900

seq1  TGCCTGTAATGCC-AGCACACAGGAGGTCAGCCTACGCAAAAAATTCCAG  948
      ||||||||||||| |||||||| || |||||||||||| |||||||||||
seq2  TGCCTGTAATGCCTAGCACACA-GACGTCAGCCTACGC-AAAAATTCCAG  948

seq1  TTCAGTCCGGTGCATGTGACCCTGACTCAAAAAATGGATAAATTAAAATG  998
      |||||||| ||||||||||||||||||||||||   ||||| | |||  |
seq2  TTCAGTCC-GTGCATGTGACCCTGACTCAAAAA--TGATAACTGAAATGG  995

seq1  TCCAATGTCTGGAAAAACCAAAAAAATA-AAAAATAAAATGTCCAAGAGG  1047
      ||| |||||| | |||| |||||||||| |||| |||| ||| | |||  
seq2  TCC-ATGTCT-GTAAAATCAAAAAAATAGAAAATTAAATTGTTCTAGA--  1041

seq1  GATGAAATTTAAATGGATTAAAATGTATCCAAAGGGATCCAACAAAGTAT  1097
      ||||||||||  ||||||| ||||| || | |||| |||  |   ||| |
seq2  GATGAAATTT-TATGGATT-AAATG-ATTCCAAGGAATC--ATCGAGT-T  1085

seq1  GATGTCATAAGCGTGAAAATCACACAAATAATGAAACCCATTACGTTAAC  1147
      |||||||| ||| ||  |||||                            
seq2  GATGTCAT-AGC-TG--AATCA----------------------------  1103

seq1  TTAAAAATTAGCGCAAAAACTAAAAATGTCAGGGTGTGGTGGGATGTCTC  1197
                                                        
seq2  --------------------------------------------------  1103

seq1  TGTCAGTGAAGTGTTTGAATTTAAACCTCGGTGCCCTAGTCAAGGTGGTG  1247
                                                        
seq2  --------------------------------------------------  1103

seq1  CGTGCCTGTAGCCCCAGCACTGGGACGGAGACCAGAGGATCCCTGGGGCA  1297
                                                        
seq2  --------------------------------------------------  1103

seq1  TGTTGGTCAGCCAGTCTAGCTGAATCA  1324
                                 
seq2  ---------------------------  1103

seq1: chr11_84073532_84074693
seq2: B6Ng01-001P23.g_67_1221 (reverse)

seq1  GTCTCTAGGGTGATAGTTTGGGGGACTGTATCAGCGGTAAATGCCATGGA  50
      ||||||||| | ||||||    |||  |||||| |||| ||||||   ||
seq2  GTCTCTAGGCT-ATAGTT---CGGAACGTATCAACGGT-AATGCCCATGA  45

seq1  AGGACATCTCATGGTAAATTTTAAAAAGAA-CTCTAGACCTGAAATGGGC  99
      || || |||||||||  |  || ||||||| |||||| ||||||   |||
seq2  AGAAC-TCTCATGGT--AGCTTGAAAAGAACCTCTAGTCCTGAA--TGGC  90

seq1  CTA-GCGCAAAGACACTGC-AAGA-GATGTTTCTGAAACATTTAGAAGGT  146
      ||| |||||||| |||||| |||| ||||||||||| |||||   |||||
seq2  CTAGGCGCAAAGTCACTGCAAAGAGGATGTTTCTGATACATTAGAAAGGT  140

seq1  GTACTTACTGGGCTGGTGGTAGGTGAAA-GAAAAGTGTGAAAAATGCTGC  195
      ||||||||||| |||||||||||||||| |||||||||| ||||||||||
seq2  GTACTTACTGGACTGGTGGTAGGTGAAAGGAAAAGTGTG-AAAATGCTGC  189

seq1  TATCATGAAGACAGACAGTCCATCACTTCTAATATAAATATGGACAGACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGAAGACAGACAGTCCATCACTTCTAATATAAATATGGACAGACA  239

seq1  GACAGAATCACAAACAGCAGCAGAATGTGTTTCAAAGTTAGGAAAGTGCT  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATCAC-AACAGCAGCAGAATGTGTTTCAAAGTTAGGAAAGTGCT  288

seq1  AGGCACGTGGTAGGCAGGCGGGTCAGGAGTTCAGCGTCATCCTCAACTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGTGGTAGGCAGGCGGGTCAGGAGTTCAGCGTCATCCTCAACTTC  338

seq1  AGAGTGAGCTTTGGACAAAATGATCCGTGAAAGCAGACAACGGCCTAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGCTTTGGACAAAATGATCCGTGAAAGCAGACAACGGCCTAAAA  388

seq1  ACAACCCAGGAATCAGTATCTGTTATTAGCCCTTAGATTTATTTCTGAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCAGGAATCAGTATCTGTTATTAGCCCTTAGATTTATTTCTGAGA  438

seq1  AATTTACCAATTGCCTGGAGATTTTGATAGATTGTATTTTGGGGTGTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAATTGCCTGGAGATTTTGATAGATTGTATTTTGGGGTGTTAA  488

seq1  ATTAAGTGTTTTCCAATTGAGATGATAGGAGAAACCTGACCTTTAAACTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGTTTTCCAATTGAGATGATAGGAGAAACCTGACCTTTAAACTG  538

seq1  TTCATGTCCATAAAGGGAGATCAGGCTCTAACTTACATCTTCATGACAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCCATAAAGGGAGATCAGGCTCTAACTTACATCTTCATGACAGG  588

seq1  TAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGATGGTGATGACTTTAACAGCTGTAGAATCTGGCTGCATCCAT  638

seq1  TATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAAACGACCTGGAGCAGCACTTGACCCTGGCTGTGTGATAGCCAA  688

seq1  AATGCAACTGGACAACCCCAGTAAAGTTCAACAGGTGAGGAGGAAGGCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACTGGACAACCCCAGTAAAGTTCAACAGGTGAGGAGGAAGGCAC  738

seq1  TGAAAACCGCTGCGAGGGTGAAAAACATGGTAGCTTGGAGGTGCTTGGTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCGCTGCGAGGGTGAAAAACATGGTAGCTTGGAGGTGCTTGGTT  788

seq1  TGCTGGTTCCTCGTCCTCTCCCATCCTTTCCCTCCTTCCGTCCTATTTTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTCCTCGTCCTCTCCCATCCTTTCCCTCCTTCCGTCCTATTTTG  838

seq1  CATATGTGTGAGAGTGTGTGTATGTGCTCTCTGCATGTATGTGTATCAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTGAGAGTGTGTGTATGTGCTCTCTGCATGTATGTGTATCAGA  888

seq1  AGAGGGCATTGAGTGTCCTGCCTTATCACGCTCTACCCTATTCCCTGGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATTGAGTGTCCTGCCTTATCACGCTCTACCCTATTCCCTGGAG  938

seq1  ACAGGGTTTTCTTATTGAACCTGGAGCTAGGCTGGTAGCCAGCAATTCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTTCTTATTGAACCTGGAGCTAGGCTGGTAGCCAGCAATTCCC  988

seq1  AGCAGTCCTGCTTCTCACCCCTCTGCCTCCAACAAGCACAGTGCTTTGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCTGCTTCTCACCCCTCTGCCTCCAACAAGCACAGTGCTTTGTG  1038

seq1  TGGCTACACTCAGCGTTTTTCTGTGGGTCCTGGGGAGTCTGAACTCAGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACACTCAGCGTTTTTCTGTGGGTCCTGGGGAGTCTGAACTCAGGT  1088

seq1  TCTAATGCTTGAATCCACTGAGCCATCTCCCCGGGCCCTGTTCTTCCCTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCTTGAATCCACTGAGCCATCTCCCCGGGCCCTGTTCTTCCCTT  1138

seq1  GTTTCCATCTTGAATTC  1162
      |||||||||||||||||
seq2  GTTTCCATCTTGAATTC  1155